Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   DACI_RS03440 Genome accession   NC_010002
Coordinates   746543..748159 (+) Length   538 a.a.
NCBI ID   WP_012202606.1    Uniprot ID   -
Organism   Delftia acidovorans SPH-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 741543..753159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DACI_RS03415 (Daci_0669) argS 741730..743427 (+) 1698 WP_012202601.1 arginine--tRNA ligase -
  DACI_RS03420 (Daci_0670) - 743448..744137 (+) 690 WP_012202602.1 SPOR domain-containing protein -
  DACI_RS03425 (Daci_0671) - 744219..744869 (+) 651 WP_012202603.1 thiol:disulfide interchange protein DsbA/DsbL -
  DACI_RS03430 (Daci_0672) lptA 745041..745703 (+) 663 WP_013804753.1 lipopolysaccharide transport periplasmic protein LptA -
  DACI_RS03435 (Daci_0673) lptB 745700..746488 (+) 789 WP_012202605.1 LPS export ABC transporter ATP-binding protein -
  DACI_RS03440 (Daci_0674) rpoN/rpoN1 746543..748159 (+) 1617 WP_012202606.1 RNA polymerase factor sigma-54 Machinery gene
  DACI_RS03445 (Daci_0675) rtcR 748198..749805 (-) 1608 WP_012202607.1 RNA repair transcriptional activator RtcR -
  DACI_RS03450 (Daci_0676) - 750503..751642 (+) 1140 WP_012202608.1 slipin family protein -
  DACI_RS03455 (Daci_0677) - 751714..752559 (+) 846 WP_012202609.1 hypothetical protein -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59264.34 Da        Isoelectric Point: 4.6422

>NTDB_id=29485 DACI_RS03440 WP_012202606.1 746543..748159(+) (rpoN/rpoN1) [Delftia acidovorans SPH-1]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEEGDHDAAAGTREPAAPGAEATESFQESR
ADQPSAAVEWEPSSDASSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGEEDEADATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGSGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRR
FADVQRQIVVPDVIVRPVRSGAGRMDFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=29485 DACI_RS03440 WP_012202606.1 746543..748159(+) (rpoN/rpoN1) [Delftia acidovorans SPH-1]
TTGAAGCCCGGTCTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACTCCCCAGCTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGAGGAGG
GCGATCACGATGCGGCTGCCGGCACCCGCGAGCCTGCCGCGCCCGGCGCCGAGGCCACGGAGTCCTTCCAGGAAAGCCGC
GCAGACCAGCCTTCGGCGGCGGTGGAGTGGGAGCCCTCGTCGGATGCATCCTCCGGCGATGCCGTGGAGACTTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGACGGCCAGACCAACTCGGGCAACGATGACCGCGACTGGGGCAGCGATGCGCCCT
CCAGCCGCACGCGCGGGCAGGGCGAGGAAGACGAGGCCGATGCCACCGAACTGGCACGCAGCGCCGAAAGCCTGACCGAC
CACCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGACCGCGCCGCACTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGATCTGGAGGAGTGCGAGGAAC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAACTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCAGCGGCAGTGCCGAGGACGAAGACCGGCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGCGACCTGCGCAAGCTCGCCA
GCCTGTGCGGTGCGCGCGAGGAGCGGCTGCGCGAGGCGCTGGTGCTGATCACCCGGCTGGAGCCACGCCCGGGCCGGCGC
TTTGCCGACGTGCAGCGCCAGATCGTCGTGCCCGACGTCATCGTGCGCCCCGTGCGCAGCGGCGCGGGCCGCATGGACTT
CAGCGTGCAGCTCAACCCCGACGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACAGGG
GCAGCGAAGGCCATGCAGCGCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAACTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAACTCAAGTATTTCTTCGGCTCGGGCCTGGGCACCGAGGCCGGTGGCAATGCCTCCAGCACG
GCCGTGCGCGCGCTGATCAAGCAGTTCGTCGCGGCCGAAGACCCCAAGAAGCCGCTGTCGGACAACCAGCTCGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACGGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.296

100

0.515

Multiple sequence alignment