Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CSB82_RS02945 Genome accession   NZ_CP029664
Coordinates   547890..548606 (-) Length   238 a.a.
NCBI ID   WP_110418046.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0226     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 542890..553606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB82_RS02925 (CSB82_0527) - 543984..544934 (+) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -
  CSB82_RS02930 (CSB82_0528) - 545083..546567 (+) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  CSB82_RS02935 (CSB82_0529) - 546564..547523 (+) 960 WP_001253312.1 carbohydrate kinase -
  CSB82_RS02940 - 547711..547818 (-) 108 WP_001790167.1 hypothetical protein -
  CSB82_RS02945 (CSB82_0530) agrA 547890..548606 (-) 717 WP_110418046.1 LytTR family DNA-binding domain-containing protein Regulator
  CSB82_RS02950 - 548625..549918 (-) 1294 Protein_544 GHKL domain-containing protein -
  CSB82_RS02955 (CSB82_0532) - 549943..550083 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide -
  CSB82_RS02960 (CSB82_0533) agrB 550080..550649 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  CSB82_RS15415 hld 550939..551019 (+) 81 WP_000046022.1 delta-hemolysin -
  CSB82_RS02970 (CSB82_0535) - 551616..552401 (-) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  CSB82_RS02975 (CSB82_0536) - 552762..553388 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27895.86 Da        Isoelectric Point: 6.0927

>NTDB_id=294824 CSB82_RS02945 WP_110418046.1 547890..548606(-) (agrA) [Staphylococcus aureus strain AR_0226]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDS
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=294824 CSB82_RS02945 WP_110418046.1 547890..548606(-) (agrA) [Staphylococcus aureus strain AR_0226]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACTCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment