Detailed information NTG0294759

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CSC33_RS18660
• Genome accession: NZ_CP029660
• Coordinates: 3905948..3906820 (+)
• Length: 290 a.a.
• NCBI ID: WP_033976386.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain AR_0446
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3900948..3911820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC33_RS18635	-	3901825..3902067 (+)	243	WP_023082027.1	hypothetical protein	-
CSC33_RS18645 (CSC33_3782)	pilA	3902334..3902789 (-)	456	WP_033976389.1	pilin	Machinery gene
CSC33_RS18650 (CSC33_3783)	pilB	3903021..3904720 (+)	1700	Protein_3623	type IV-A pilus assembly ATPase PilB	-
CSC33_RS18655 (CSC33_3785)	pilC	3904724..3905944 (+)	1221	WP_110194327.1	type 4a pilus biogenesis protein PilC	Machinery gene
CSC33_RS18660 (CSC33_3786)	pilD	3905948..3906820 (+)	873	WP_033976386.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
CSC33_RS18665 (CSC33_3787)	coaE	3906817..3907428 (+)	612	WP_033970460.1	dephospho-CoA kinase	-
CSC33_RS18670 (CSC33_3788)	yacG	3907425..3907625 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
CSC33_RS18675 (CSC33_3789)	-	3907662..3907871 (-)	210	WP_003094660.1	hypothetical protein	-
CSC33_RS18680 (CSC33_3790)	-	3907977..3908666 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
CSC33_RS18685 (CSC33_3791)	-	3908663..3909133 (-)	471	WP_033970459.1	hypothetical protein	-
CSC33_RS18690 (CSC33_3792)	-	3909130..3909555 (-)	426	WP_033976385.1	GNAT family N-acetyltransferase	-
CSC33_RS18695 (CSC33_3793)	-	3909688..3910317 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
CSC33_RS18700 (CSC33_3794)	-	3910314..3910763 (+)	450	WP_033970456.1	MOSC domain-containing protein	-
CSC33_RS18705 (CSC33_3795)	-	3910789..3910959 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31825.86 Da
• Isoelectric Point: 7.7068

>NTDB_id=294759 CSC33_RS18660 WP_033976386.1 3905948..3906820(+) (pilD) [Pseudomonas aeruginosa strain AR_0446]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLVANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=294759 CSC33_RS18660 WP_033976386.1 3905948..3906820(+) (pilD) [Pseudomonas aeruginosa strain AR_0446]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAGCG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTGGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGGTCGCCAATCATTTCGGTCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469