Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CSC33_RS04290 Genome accession   NZ_CP029660
Coordinates   918545..919180 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain AR_0446     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 913545..924180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC33_RS04275 (CSC33_0861) - 914251..915495 (+) 1245 WP_033975958.1 lipoprotein-releasing ABC transporter permease subunit -
  CSC33_RS04280 (CSC33_0862) - 915583..916116 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  CSC33_RS04285 (CSC33_0863) comA 916247..918472 (+) 2226 WP_110193710.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CSC33_RS04290 (CSC33_0864) exbB 918545..919180 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CSC33_RS04295 (CSC33_0865) - 919177..919617 (+) 441 WP_110193711.1 biopolymer transporter ExbD -
  CSC33_RS04300 (CSC33_0866) lpxK 919617..920615 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  CSC33_RS04305 (CSC33_0867) - 920653..920838 (+) 186 WP_003091157.1 Trm112 family protein -
  CSC33_RS04310 (CSC33_0868) kdsB 920838..921602 (+) 765 WP_033968892.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CSC33_RS04315 (CSC33_0869) - 921602..922066 (+) 465 WP_110193712.1 low molecular weight protein-tyrosine-phosphatase -
  CSC33_RS04320 (CSC33_0870) murB 922063..923082 (+) 1020 WP_033968886.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=294749 CSC33_RS04290 WP_003091163.1 918545..919180(+) (exbB) [Pseudomonas aeruginosa strain AR_0446]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=294749 CSC33_RS04290 WP_003091163.1 918545..919180(+) (exbB) [Pseudomonas aeruginosa strain AR_0446]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAAGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment