Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   EQZ01_RS19340 Genome accession   NZ_CP035231
Coordinates   3691183..3692316 (-) Length   377 a.a.
NCBI ID   WP_128738331.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3686183..3697316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS19300 (EQZ01_19300) ywnA 3686345..3686746 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  EQZ01_RS19305 (EQZ01_19305) ureC 3686881..3688590 (-) 1710 WP_128738329.1 urease subunit alpha -
  EQZ01_RS19310 (EQZ01_19310) ureB 3688587..3688961 (-) 375 WP_015251023.1 urease subunit beta -
  EQZ01_RS19315 (EQZ01_19315) ureA 3688958..3689275 (-) 318 WP_003227724.1 urease subunit gamma -
  EQZ01_RS19320 (EQZ01_19320) - 3689466..3689626 (-) 161 Protein_3734 hypothetical protein -
  EQZ01_RS22060 - 3689905..3690073 (-) 169 Protein_3735 urea ABC transporter substrate-binding protein -
  EQZ01_RS19330 (EQZ01_19330) csbD 3690287..3690475 (-) 189 WP_128738330.1 stress response protein CsbD -
  EQZ01_RS19335 (EQZ01_19335) - 3690548..3691027 (-) 480 WP_003244390.1 hypothetical protein -
  EQZ01_RS19340 (EQZ01_19340) rapC 3691183..3692316 (-) 1134 WP_128738331.1 response regulator aspartate phosphatase RapB Regulator
  EQZ01_RS19345 (EQZ01_19345) moaA 3692508..3693533 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  EQZ01_RS19350 (EQZ01_19350) fdhD 3693549..3694337 (-) 789 WP_128738332.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  EQZ01_RS19355 (EQZ01_19355) - 3694570..3694731 (-) 162 WP_128738333.1 hypothetical protein -
  EQZ01_RS19360 (EQZ01_19360) ywmD 3694826..3695500 (-) 675 WP_003243553.1 VWA domain-containing protein -
  EQZ01_RS19365 (EQZ01_19365) - 3695553..3695693 (-) 141 WP_003227702.1 hypothetical protein -
  EQZ01_RS19370 (EQZ01_19370) ywmC 3695824..3696507 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45023.15 Da        Isoelectric Point: 4.7975

>NTDB_id=294746 EQZ01_RS19340 WP_128738331.1 3691183..3692316(-) (rapC) [Bacillus subtilis strain SRCM103571]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALDTYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=294746 EQZ01_RS19340 WP_128738331.1 3691183..3692316(-) (rapC) [Bacillus subtilis strain SRCM103571]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGACACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAGCATTTGGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422

Multiple sequence alignment