Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   EQZ01_RS11910 Genome accession   NZ_CP035231
Coordinates   2302177..2303667 (-) Length   496 a.a.
NCBI ID   WP_077671399.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2297177..2308667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS11880 (EQZ01_11880) gudB 2297321..2298595 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  EQZ01_RS11885 (EQZ01_11885) mecB 2298751..2299335 (-) 585 WP_003230533.1 genetic competence negative regulator -
  EQZ01_RS11890 (EQZ01_11890) ypbG 2299494..2300273 (-) 780 WP_046381152.1 metallophosphoesterase -
  EQZ01_RS11895 (EQZ01_11895) ypbF 2300360..2300803 (-) 444 WP_003230531.1 YpbF family protein -
  EQZ01_RS11900 (EQZ01_11900) claE 2300866..2301597 (-) 732 WP_038429216.1 LysM peptidoglycan-binding domain-containing protein -
  EQZ01_RS11905 (EQZ01_11905) ypbD 2301548..2302150 (-) 603 WP_175404998.1 CPBP family glutamic-type intramembrane protease -
  EQZ01_RS11910 (EQZ01_11910) recS 2302177..2303667 (-) 1491 WP_077671399.1 ATP-dependent DNA helicase RecQ Machinery gene
  EQZ01_RS11915 (EQZ01_11915) gmmB 2303660..2304718 (-) 1059 WP_077671400.1 helix-turn-helix domain-containing protein -
  EQZ01_RS11920 (EQZ01_11920) fdxA 2304984..2305232 (+) 249 WP_003225461.1 ferredoxin -
  EQZ01_RS11925 (EQZ01_11925) fmnP 2305270..2305842 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  EQZ01_RS11930 (EQZ01_11930) serA 2306339..2307916 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56524.10 Da        Isoelectric Point: 6.6626

>NTDB_id=294692 EQZ01_RS11910 WP_077671399.1 2302177..2303667(-) (recS) [Bacillus subtilis strain SRCM103571]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLKKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRSPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=294692 EQZ01_RS11910 WP_077671399.1 2302177..2303667(-) (recS) [Bacillus subtilis strain SRCM103571]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGAAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGAAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGGCAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACGGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGTCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGAGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994

Multiple sequence alignment