Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   EQZ01_RS10845 Genome accession   NZ_CP035231
Coordinates   2123712..2125487 (-) Length   591 a.a.
NCBI ID   WP_128737945.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2118712..2130487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS10825 (EQZ01_10825) desE 2119092..2120150 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  EQZ01_RS10830 (EQZ01_10830) desK 2120270..2121382 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  EQZ01_RS10835 (EQZ01_10835) desR 2121401..2122000 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  EQZ01_RS21765 - 2122150..2122419 (+) 270 WP_024573293.1 hypothetical protein -
  EQZ01_RS10840 (EQZ01_10840) walN 2122602..2123465 (-) 864 WP_003231267.1 3D domain-containing protein -
  EQZ01_RS10845 (EQZ01_10845) recQ 2123712..2125487 (-) 1776 WP_128737945.1 DNA helicase RecQ Machinery gene
  EQZ01_RS10860 (EQZ01_10860) azoJ 2126052..2126678 (-) 627 WP_128737947.1 FMN-dependent NADH-azoreductase AzoJ -
  EQZ01_RS10865 (EQZ01_10865) stpP 2126831..2127322 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  EQZ01_RS10870 (EQZ01_10870) - 2127397..2127729 (-) 333 WP_003231257.1 hypothetical protein -
  EQZ01_RS10875 (EQZ01_10875) - 2127807..2128034 (+) 228 WP_015383862.1 hypothetical protein -
  EQZ01_RS10880 (EQZ01_10880) yocM 2128021..2128497 (-) 477 WP_003231255.1 salt stress-responsive protein YocM -
  EQZ01_RS10885 (EQZ01_10885) - 2128564..2128827 (+) 264 WP_004399338.1 hypothetical protein -
  EQZ01_RS10890 (EQZ01_10890) - 2128832..2129065 (+) 234 WP_003231251.1 hypothetical protein -
  EQZ01_RS10895 (EQZ01_10895) yozO 2129151..2129495 (-) 345 WP_003220141.1 PH domain-containing protein -
  EQZ01_RS10900 (EQZ01_10900) yozC 2129852..2130055 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67416.89 Da        Isoelectric Point: 6.1778

>NTDB_id=294689 EQZ01_RS10845 WP_128737945.1 2123712..2125487(-) (recQ) [Bacillus subtilis strain SRCM103571]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEVRQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=294689 EQZ01_RS10845 WP_128737945.1 2123712..2125487(-) (recQ) [Bacillus subtilis strain SRCM103571]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGTGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
AGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATACGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCCGGCAGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCCTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

HRDC domain (HRDC)

(518-583)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.323

100

0.993