Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   EQZ01_RS09620 Genome accession   NZ_CP035231
Coordinates   1812589..1813020 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain SRCM103571     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1807589..1818020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS09600 (EQZ01_09600) spoVS 1808150..1808410 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  EQZ01_RS09605 (EQZ01_09605) tdh 1808676..1809719 (+) 1044 WP_128737863.1 L-threonine 3-dehydrogenase -
  EQZ01_RS09610 (EQZ01_09610) kbl 1809732..1810910 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  EQZ01_RS09615 (EQZ01_09615) miaB 1811058..1812587 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  EQZ01_RS09620 (EQZ01_09620) ymcA 1812589..1813020 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  EQZ01_RS09625 (EQZ01_09625) cotE 1813274..1813819 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  EQZ01_RS09630 (EQZ01_09630) hexA 1813952..1816528 (+) 2577 WP_128737864.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=294683 EQZ01_RS09620 WP_003231834.1 1812589..1813020(+) (ymcA) [Bacillus subtilis strain SRCM103571]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=294683 EQZ01_RS09620 WP_003231834.1 1812589..1813020(+) (ymcA) [Bacillus subtilis strain SRCM103571]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTTCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment