Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   EQZ01_RS02625 Genome accession   NZ_CP035231
Coordinates   503606..504040 (+) Length   144 a.a.
NCBI ID   WP_128737514.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103571     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 498606..509040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQZ01_RS02595 (EQZ01_02595) ydaD 499254..500114 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  EQZ01_RS02600 (EQZ01_02600) lyxE 500130..500633 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  EQZ01_RS02605 (EQZ01_02605) ydaF 500720..501271 (+) 552 WP_017697339.1 GNAT family protein -
  EQZ01_RS02610 (EQZ01_02610) ydaG 501349..501771 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  EQZ01_RS02615 (EQZ01_02615) amj 502277..503086 (+) 810 WP_003234394.1 lipid II flippase Amj -
  EQZ01_RS02620 (EQZ01_02620) ydzA 503131..503421 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  EQZ01_RS02625 (EQZ01_02625) lrpC 503606..504040 (+) 435 WP_128737514.1 transcriptional regulator LrpC Machinery gene
  EQZ01_RS02630 (EQZ01_02630) topB 504105..506288 (+) 2184 WP_128737515.1 DNA topoisomerase III -
  EQZ01_RS02635 (EQZ01_02635) ephJ 506491..507579 (+) 1089 WP_128737516.1 lipoprotein YdaJ -
  EQZ01_RS02640 (EQZ01_02640) epsK 507560..508411 (+) 852 WP_128737517.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16466.03 Da        Isoelectric Point: 7.7037

>NTDB_id=294632 EQZ01_RS02625 WP_128737514.1 503606..504040(+) (lrpC) [Bacillus subtilis strain SRCM103571]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGASCYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=294632 EQZ01_RS02625 WP_128737514.1 503606..504040(+) (lrpC) [Bacillus subtilis strain SRCM103571]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCACCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCATCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993