Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   CSC54_RS06875 Genome accession   NZ_CP029655
Coordinates   1319708..1320424 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain AR_0469     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314708..1325424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC54_RS06855 (CSC54_1220) - 1315800..1316750 (+) 951 WP_000790331.1 LacI family DNA-binding transcriptional regulator -
  CSC54_RS06860 (CSC54_1221) - 1316899..1318383 (+) 1485 WP_000141432.1 glycoside hydrolase family 32 protein -
  CSC54_RS06865 (CSC54_1222) - 1318380..1319339 (+) 960 WP_001253312.1 carbohydrate kinase -
  CSC54_RS06870 - 1319527..1319636 (-) 110 Protein_1235 hypothetical protein -
  CSC54_RS06875 (CSC54_1223) agrA 1319708..1320424 (-) 717 WP_000688492.1 LytTR family DNA-binding domain-containing protein Regulator
  CSC54_RS06880 - 1320443..1321726 (-) 1284 Protein_1237 sensor histidine kinase -
  CSC54_RS06885 (CSC54_1226) - 1321756..1321899 (-) 144 WP_001094921.1 cyclic lactone autoinducer peptide -
  CSC54_RS06890 (CSC54_1227) - 1321902..1322465 (-) 564 WP_001105696.1 accessory gene regulator ArgB-like protein -
  CSC54_RS15170 hld 1322755..1322835 (+) 81 WP_000046022.1 delta-hemolysin -
  CSC54_RS06900 (CSC54_1229) - 1323435..1324220 (-) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  CSC54_RS06905 (CSC54_1230) - 1324585..1325211 (-) 627 WP_000522381.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=294624 CSC54_RS06875 WP_000688492.1 1319708..1320424(-) (agrA) [Staphylococcus aureus strain AR_0469]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=294624 CSC54_RS06875 WP_000688492.1 1319708..1320424(-) (agrA) [Staphylococcus aureus strain AR_0469]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment