Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CSC56_RS06060 Genome accession   NZ_CP029652
Coordinates   1136239..1136808 (-) Length   189 a.a.
NCBI ID   WP_000872878.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0471     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131239..1141808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC56_RS06015 (CSC56_1100) - 1131712..1132320 (-) 609 WP_000020295.1 class I SAM-dependent methyltransferase -
  CSC56_RS06020 (CSC56_1101) rplL 1132495..1132863 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  CSC56_RS06025 (CSC56_1102) rplJ 1132906..1133406 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  CSC56_RS06035 (CSC56_1103) rplA 1133678..1134370 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  CSC56_RS06040 (CSC56_1104) rplK 1134578..1135000 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  CSC56_RS06045 (CSC56_1105) nusG 1135182..1135730 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  CSC56_RS06050 (CSC56_1106) secE 1135743..1135925 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CSC56_RS06055 (CSC56_1107) rpmG 1135981..1136124 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  CSC56_RS06060 (CSC56_1108) sigH 1136239..1136808 (-) 570 WP_000872878.1 RNA polymerase sigma factor Regulator
  CSC56_RS06065 (CSC56_1109) - 1136889..1137413 (-) 525 WP_000664731.1 NYN domain-containing protein -
  CSC56_RS06070 (CSC56_1110) rlmB 1137413..1138159 (-) 747 WP_049311725.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CSC56_RS06075 (CSC56_1111) - 1138167..1138571 (-) 405 WP_000370179.1 Mini-ribonuclease 3 -
  CSC56_RS06080 (CSC56_1112) cysS 1138564..1139964 (-) 1401 WP_000631980.1 cysteine--tRNA ligase -
  CSC56_RS06085 (CSC56_1113) cysE 1139948..1140595 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=294546 CSC56_RS06060 WP_000872878.1 1136239..1136808(-) (sigH) [Staphylococcus aureus strain AR_0471]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCVIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=294546 CSC56_RS06060 WP_000872878.1 1136239..1136808(-) (sigH) [Staphylococcus aureus strain AR_0471]
TTGAAATATGATTTGACAACTCAAGATAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGTAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment