Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   EQY76_RS06805 Genome accession   NZ_CP035230
Coordinates   1290907..1292043 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103551     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285907..1297043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY76_RS06785 (EQY76_06785) uxaA 1286356..1287849 (+) 1494 WP_128753567.1 altronate dehydratase family protein -
  EQY76_RS06790 (EQY76_06790) yjnA 1287888..1288652 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  EQY76_RS06795 (EQY76_06795) bstD 1288877..1289341 (-) 465 WP_014479541.1 DinB family protein -
  EQY76_RS06800 (EQY76_06800) yjoB 1289490..1290761 (+) 1272 WP_076457808.1 ATPase YjoB -
  EQY76_RS06805 (EQY76_06805) rapC 1290907..1292043 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  EQY76_RS06810 (EQY76_06810) phrA 1292033..1292167 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  EQY76_RS06815 (EQY76_06815) yjpA 1292197..1292439 (-) 243 WP_046380953.1 YciI family protein -
  EQY76_RS06820 (EQY76_06820) xlyB 1292567..1293520 (+) 954 WP_046380954.1 N-acetylmuramoyl-L-alanine amidase -
  EQY76_RS06825 (EQY76_06825) yjqA 1293560..1293937 (-) 378 WP_014476529.1 PH domain-containing protein -
  EQY76_RS06830 (EQY76_06830) pghB 1294042..1294644 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  EQY76_RS06835 (EQY76_06835) xpdC 1294721..1295557 (+) 837 WP_046380955.1 manganese catalase family protein -
  EQY76_RS06840 (EQY76_06840) xkdA 1295593..1296189 (-) 597 WP_019712456.1 ImmA/IrrE family metallo-endopeptidase -
  EQY76_RS06845 (EQY76_06845) xre 1296352..1296693 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=294511 EQY76_RS06805 WP_015252291.1 1290907..1292043(+) (rapC) [Bacillus subtilis strain SRCM103551]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=294511 EQY76_RS06805 WP_015252291.1 1290907..1292043(+) (rapC) [Bacillus subtilis strain SRCM103551]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAGGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418