Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CSC57_RS00870 Genome accession   NZ_CP029649
Coordinates   167451..167897 (+) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0472     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 162451..172897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC57_RS00835 (CSC57_0155) - 162945..163148 (+) 204 WP_000087561.1 YqgQ family protein -
  CSC57_RS00840 (CSC57_0156) - 163145..164131 (+) 987 WP_000161314.1 ROK family glucokinase -
  CSC57_RS00845 (CSC57_0157) - 164131..164460 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CSC57_RS00850 (CSC57_0158) - 164457..165080 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CSC57_RS00855 (CSC57_0159) comGA 165132..166106 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  CSC57_RS00860 (CSC57_0160) comGB 166078..167148 (+) 1071 WP_000776401.1 competence type IV pilus assembly protein ComGB Machinery gene
  CSC57_RS00865 (CSC57_0161) comGC 167162..167473 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CSC57_RS00870 (CSC57_0162) comGD 167451..167897 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  CSC57_RS00875 (CSC57_0163) comGE 167884..168183 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  CSC57_RS00880 (CSC57_0164) comGF 168101..168598 (+) 498 WP_020978197.1 competence type IV pilus minor pilin ComGF Machinery gene
  CSC57_RS00885 - 168695..168841 (+) 147 WP_001789879.1 hypothetical protein -
  CSC57_RS00890 (CSC57_0165) - 168831..169355 (+) 525 WP_001015121.1 shikimate kinase -
  CSC57_RS00895 (CSC57_0166) gcvT 169514..170605 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  CSC57_RS00900 (CSC57_0167) gcvPA 170625..171971 (+) 1347 WP_000019681.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=294493 CSC57_RS00870 WP_001788899.1 167451..167897(+) (comGD) [Staphylococcus aureus strain AR_0472]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=294493 CSC57_RS00870 WP_001788899.1 167451..167897(+) (comGD) [Staphylococcus aureus strain AR_0472]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment