Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   EQY76_RS02420 Genome accession   NZ_CP035230
Coordinates   468265..468699 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103551     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463265..473699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY76_RS02390 (EQY76_02390) ydaD 463913..464773 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  EQY76_RS02395 (EQY76_02395) lyxE 464789..465291 (+) 503 Protein_426 D-lyxose ketol-isomerase -
  EQY76_RS02400 (EQY76_02400) ydaF 465379..465930 (+) 552 WP_014478866.1 GNAT family protein -
  EQY76_RS02405 (EQY76_02405) ydaG 466008..466430 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  EQY76_RS02410 (EQY76_02410) amj 466936..467745 (+) 810 WP_032722918.1 lipid II flippase Amj -
  EQY76_RS02415 (EQY76_02415) ydzA 467790..468080 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  EQY76_RS02420 (EQY76_02420) lrpC 468265..468699 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  EQY76_RS02425 (EQY76_02425) topB 468764..470947 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  EQY76_RS02430 (EQY76_02430) ephJ 471149..472237 (+) 1089 WP_003246551.1 lipoprotein -
  EQY76_RS02435 (EQY76_02435) epsK 472218..473069 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=294476 EQY76_RS02420 WP_003246585.1 468265..468699(+) (lrpC) [Bacillus subtilis strain SRCM103551]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=294476 EQY76_RS02420 WP_003246585.1 468265..468699(+) (lrpC) [Bacillus subtilis strain SRCM103551]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1