Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EQY74_RS17550 Genome accession   NZ_CP035228
Coordinates   3310778..3311251 (-) Length   157 a.a.
NCBI ID   WP_003184615.1    Uniprot ID   Q65FU5
Organism   Bacillus licheniformis strain SRCM103529     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3305778..3316251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY74_RS17510 (EQY74_17510) - 3306291..3307079 (+) 789 WP_003184598.1 ABC transporter ATP-binding protein -
  EQY74_RS17515 (EQY74_17515) - 3307042..3307866 (+) 825 WP_009329424.1 ABC transporter permease -
  EQY74_RS17520 (EQY74_17520) ytkD 3307897..3308373 (-) 477 WP_003184602.1 RNA deprotection pyrophosphohydrolase -
  EQY74_RS17525 (EQY74_17525) - 3308568..3308891 (-) 324 WP_003184604.1 hypothetical protein -
  EQY74_RS17530 (EQY74_17530) - 3308939..3309343 (-) 405 WP_003184607.1 phage holin family protein -
  EQY74_RS17535 (EQY74_17535) - 3309495..3309932 (-) 438 WP_003184609.1 Dps family protein -
  EQY74_RS17540 (EQY74_17540) ytzI 3310066..3310209 (+) 144 WP_011201722.1 YtzI protein -
  EQY74_RS17545 (EQY74_17545) - 3310203..3310646 (-) 444 WP_009329425.1 FixH family protein -
  EQY74_RS17550 (EQY74_17550) luxS 3310778..3311251 (-) 474 WP_003184615.1 S-ribosylhomocysteine lyase Regulator
  EQY74_RS17555 (EQY74_17555) yidD 3311389..3311616 (+) 228 WP_003184617.1 membrane protein insertion efficiency factor YidD -
  EQY74_RS17560 (EQY74_17560) - 3311613..3312182 (-) 570 WP_025808461.1 carbonic anhydrase -
  EQY74_RS17565 (EQY74_17565) - 3312309..3313490 (+) 1182 WP_025808459.1 GTP-binding protein -
  EQY74_RS17570 (EQY74_17570) - 3313589..3314620 (+) 1032 WP_009329427.1 zinc ABC transporter substrate-binding protein -
  EQY74_RS17575 (EQY74_17575) - 3314706..3314951 (-) 246 WP_003184624.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17885.47 Da        Isoelectric Point: 5.5531

>NTDB_id=294424 EQY74_RS17550 WP_003184615.1 3310778..3311251(-) (luxS) [Bacillus licheniformis strain SRCM103529]
MPSVESFELDHNAVKAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRTYAEKYDHFDIIDIS
PMGCQTGYYLVVSGEPKVEEIVDLLEDTFKEAVEVTEIPAANEKQCGQAKLHDLEGAKRMMRFWLSQNKEDLLKVFG

Nucleotide


Download         Length: 474 bp        

>NTDB_id=294424 EQY74_RS17550 WP_003184615.1 3310778..3311251(-) (luxS) [Bacillus licheniformis strain SRCM103529]
ATGCCTTCAGTTGAAAGTTTTGAGCTTGACCATAATGCGGTAAAAGCGCCTTATGTCAGACACTGCGGCGTCCACAAAGT
GGGAACGGACGGCGTCGTCAACAAGTTTGACATCCGTTTTTGCCAGCCGAATAAACAGGCAATGAAACCTGATACGATTC
ATACTTTGGAGCACCTTCTTGCATTTACAATCCGCACATATGCGGAAAAATATGACCACTTTGATATTATCGACATTTCG
CCGATGGGCTGCCAAACGGGCTATTACCTGGTGGTAAGCGGTGAGCCGAAAGTGGAAGAAATCGTTGATTTGCTTGAGGA
TACGTTCAAAGAAGCCGTTGAAGTGACTGAAATTCCGGCGGCTAACGAAAAACAGTGCGGCCAGGCAAAGCTTCACGATC
TTGAAGGCGCAAAGCGCATGATGCGTTTTTGGCTTTCGCAAAATAAAGAAGACCTGCTCAAGGTGTTTGGGTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-150)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65FU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

35.802

100

0.369