Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   DLJ56_RS06225 Genome accession   NZ_CP029629
Coordinates   1176758..1177255 (+) Length   165 a.a.
NCBI ID   WP_029694050.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MOK063     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1171758..1182255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ56_RS06185 (DLJ56_06185) - 1171802..1172788 (+) 987 WP_000161314.1 ROK family glucokinase -
  DLJ56_RS06190 (DLJ56_06190) - 1172788..1173117 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  DLJ56_RS06195 (DLJ56_06195) - 1173114..1173737 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  DLJ56_RS06200 (DLJ56_06200) comGA 1173789..1174763 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  DLJ56_RS06205 (DLJ56_06205) comGB 1174735..1175805 (+) 1071 WP_000776421.1 competence type IV pilus assembly protein ComGB Machinery gene
  DLJ56_RS06210 (DLJ56_06210) comGC 1175819..1176130 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  DLJ56_RS06215 (DLJ56_06215) comGD 1176108..1176554 (+) 447 WP_072433556.1 competence type IV pilus minor pilin ComGD Machinery gene
  DLJ56_RS06220 (DLJ56_06220) comGE 1176541..1176840 (+) 300 WP_070001831.1 competence protein ComGE Machinery gene
  DLJ56_RS06225 (DLJ56_06225) comGF 1176758..1177255 (+) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  DLJ56_RS06230 (DLJ56_06230) - 1177352..1177498 (+) 147 WP_001789879.1 hypothetical protein -
  DLJ56_RS06235 (DLJ56_06235) - 1177488..1178012 (+) 525 WP_001015121.1 shikimate kinase -
  DLJ56_RS06240 (DLJ56_06240) gcvT 1178171..1179262 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  DLJ56_RS06245 (DLJ56_06245) gcvPA 1179282..1180628 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  DLJ56_RS06250 (DLJ56_06250) gcvPB 1180621..1182093 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19199.92 Da        Isoelectric Point: 10.2192

>NTDB_id=294397 DLJ56_RS06225 WP_029694050.1 1176758..1177255(+) (comGF) [Staphylococcus aureus strain MOK063]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIELRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTSFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=294397 DLJ56_RS06225 WP_029694050.1 1176758..1177255(+) (comGF) [Staphylococcus aureus strain MOK063]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAACTTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CTTCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(68-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

96.97

100

0.97
  comGF Staphylococcus aureus N315

96.97

100

0.97

Multiple sequence alignment