Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   EQY74_RS10160 Genome accession   NZ_CP035228
Coordinates   1949582..1950013 (+) Length   143 a.a.
NCBI ID   WP_003181967.1    Uniprot ID   Q65JE4
Organism   Bacillus licheniformis strain SRCM103529     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944582..1955013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQY74_RS10140 (EQY74_10140) - 1944629..1945549 (+) 921 WP_075753444.1 dipeptidase -
  EQY74_RS10145 (EQY74_10145) tdh 1945674..1946717 (+) 1044 WP_128739513.1 L-threonine 3-dehydrogenase -
  EQY74_RS10150 (EQY74_10150) - 1946732..1947907 (+) 1176 WP_128739425.1 glycine C-acetyltransferase -
  EQY74_RS10155 (EQY74_10155) miaB 1948051..1949580 (+) 1530 WP_003181965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  EQY74_RS10160 (EQY74_10160) ymcA 1949582..1950013 (+) 432 WP_003181967.1 RicAFT regulatory complex protein RicA family protein Regulator
  EQY74_RS10165 (EQY74_10165) cotE 1950256..1950804 (+) 549 WP_003181968.1 outer spore coat protein CotE -
  EQY74_RS10170 (EQY74_10170) hexA 1950915..1953524 (+) 2610 WP_011197985.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16031.27 Da        Isoelectric Point: 5.0583

>NTDB_id=294375 EQY74_RS10160 WP_003181967.1 1949582..1950013(+) (ymcA) [Bacillus licheniformis strain SRCM103529]
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=294375 EQY74_RS10160 WP_003181967.1 1949582..1950013(+) (ymcA) [Bacillus licheniformis strain SRCM103529]
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65JE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

86.713

100

0.867

Multiple sequence alignment