Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   C0060_RS07115 Genome accession   NZ_CP029614
Coordinates   1533953..1535761 (-) Length   602 a.a.
NCBI ID   WP_086875189.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain Byun-jo-01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528953..1540761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0060_RS07090 (LJ1_01434) - 1529283..1529561 (+) 279 WP_011162513.1 metalloregulator ArsR/SmtB family transcription factor -
  C0060_RS07095 (LJ1_01435) - 1529863..1530762 (+) 900 WP_086875191.1 zinc ABC transporter substrate-binding protein -
  C0060_RS07100 (LJ1_01436) - 1530801..1531460 (+) 660 WP_004898011.1 ATP-binding cassette domain-containing protein -
  C0060_RS07105 (LJ1_01437) - 1531460..1532251 (+) 792 WP_011162511.1 metal ABC transporter permease -
  C0060_RS07110 (LJ1_01438) - 1532373..1533884 (+) 1512 WP_164084827.1 lactate permease LctP family transporter -
  C0060_RS07115 (LJ1_01439) pepF 1533953..1535761 (-) 1809 WP_086875189.1 oligoendopeptidase F Regulator
  C0060_RS07120 (LJ1_01440) - 1535925..1537049 (+) 1125 WP_086875188.1 LCP family protein -
  C0060_RS07125 (LJ1_01441) - 1537154..1537426 (-) 273 WP_086875187.1 hypothetical protein -
  C0060_RS07130 (LJ1_01442) - 1537651..1538034 (+) 384 WP_053107376.1 hypothetical protein -
  C0060_RS07135 (LJ1_01443) - 1538034..1539581 (+) 1548 WP_011162505.1 ABC-F family ATP-binding cassette domain-containing protein -
  C0060_RS07140 (LJ1_01444) - 1539598..1540380 (+) 783 WP_086875185.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68680.41 Da        Isoelectric Point: 4.5647

>NTDB_id=294285 C0060_RS07115 WP_086875189.1 1533953..1535761(-) (pepF) [Lactobacillus johnsonii strain Byun-jo-01]
MAIPTRNEVSDDLKWDLSRVFKDDQEWEQEYNRVATEIKNLGRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQYRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNSFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDKERTAYINFLKAGSSDY
PTEIMKRAGVDMTKADYLKDAFNIFEERLNEFEKIVDELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=294285 C0060_RS07115 WP_086875189.1 1533953..1535761(-) (pepF) [Lactobacillus johnsonii strain Byun-jo-01]
ATGGCTATTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCGGGTCGCAACCGAAATTAAAAATTTAGGTAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAGGGGATTACAGAAATTTTATCTGTGAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTTGTTGCTAAAGCTCAAAGCTTAGCTAACCAGATGAGCGCCGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAGACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAATATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATTCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATACAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTTTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCTGATGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTATGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCACTTCTATTACAACTTCTATGTTTACCAATATGCAACAGGTTTTGCTGCTGCTACAGCTC
TCGCAAATAATGTTGTTCATGGTACTGACAAAGAACGTACCGCTTATATTAATTTCTTAAAGGCTGGCTCTTCAGATTAT
CCAACAGAGATAATGAAACGTGCCGGTGTCGATATGACAAAGGCCGATTACTTAAAAGACGCATTTAACATCTTTGAAGA
ACGCCTTAATGAGTTTGAAAAAATCGTTGATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.01

98.671

0.503

Multiple sequence alignment