Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DLK06_RS02495 Genome accession   NZ_CP029610
Coordinates   500050..500934 (+) Length   294 a.a.
NCBI ID   WP_032057394.1    Uniprot ID   A0AAE9M991
Organism   Acinetobacter pittii strain ST220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495050..505934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS02470 (DLK06_02470) - 495360..496607 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  DLK06_RS02475 (DLK06_02475) wrbA 496972..497574 (+) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  DLK06_RS02480 (DLK06_02480) xpt 497626..498201 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  DLK06_RS02485 (DLK06_02485) - 498274..498987 (-) 714 WP_014207724.1 DUF3108 domain-containing protein -
  DLK06_RS02490 (DLK06_02490) - 499146..499817 (-) 672 WP_032057392.1 hypothetical protein -
  DLK06_RS02495 (DLK06_02495) tonB2 500050..500934 (+) 885 WP_032057394.1 energy transducer TonB Machinery gene
  DLK06_RS02500 (DLK06_02500) ybeY 500986..501462 (-) 477 WP_017481656.1 rRNA maturation RNase YbeY -
  DLK06_RS02505 (DLK06_02505) phoL 501472..502560 (-) 1089 WP_002119513.1 PhoH family protein -
  DLK06_RS02510 (DLK06_02510) miaB 502598..504049 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33693.20 Da        Isoelectric Point: 7.6767

>NTDB_id=294184 DLK06_RS02495 WP_032057394.1 500050..500934(+) (tonB2) [Acinetobacter pittii strain ST220]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGSGA
FREAHRTSSDTPNPRLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=294184 DLK06_RS02495 WP_032057394.1 500050..500934(+) (tonB2) [Acinetobacter pittii strain ST220]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTGGCACAAGCAGATCAGCAAGGCTCGGGCGCC
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGAGGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGACGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCTGCTAAGTCTTCAGTACGTCGCGGTGCACCATTTGGACATTTTGA
TGCCAACATGAAAGATATTTCGGAGTTACGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878

Multiple sequence alignment