Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   EQW70_RS02410 Genome accession   NZ_CP035226
Coordinates   466123..466557 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM103517     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461123..471557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS02380 (EQW70_02380) ydaD 461770..462630 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  EQW70_RS02385 (EQW70_02385) lyxE 462646..463149 (+) 504 WP_072173992.1 D-lyxose ketol-isomerase -
  EQW70_RS02390 (EQW70_02390) ydaF 463235..463786 (+) 552 WP_003234398.1 GNAT family protein -
  EQW70_RS02395 (EQW70_02395) ydaG 463864..464286 (+) 423 WP_014475844.1 pyridoxamine 5'-phosphate oxidase family protein -
  EQW70_RS02400 (EQW70_02400) amj 464794..465603 (+) 810 WP_015715258.1 lipid II flippase Amj -
  EQW70_RS02405 (EQW70_02405) ydzA 465648..465938 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  EQW70_RS02410 (EQW70_02410) lrpC 466123..466557 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  EQW70_RS02415 (EQW70_02415) topB 466622..468805 (+) 2184 WP_128740030.1 DNA topoisomerase III -
  EQW70_RS02420 (EQW70_02420) ephJ 469007..470095 (+) 1089 WP_128740031.1 lipoprotein YdaJ -
  EQW70_RS02425 (EQW70_02425) epsK 470076..470927 (+) 852 WP_021481723.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=294181 EQW70_RS02410 WP_003246585.1 466123..466557(+) (lrpC) [Bacillus subtilis strain SRCM103517]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=294181 EQW70_RS02410 WP_003246585.1 466123..466557(+) (lrpC) [Bacillus subtilis strain SRCM103517]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTAGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment