Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DLK06_RS01780 Genome accession   NZ_CP029610
Coordinates   367909..368718 (+) Length   269 a.a.
NCBI ID   WP_005067126.1    Uniprot ID   A0A009NM66
Organism   Acinetobacter pittii strain ST220     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 362909..373718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS01745 (DLK06_01745) - 363467..363622 (-) 156 Protein_333 hypothetical protein -
  DLK06_RS01750 (DLK06_01750) rpoZ 363661..363939 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  DLK06_RS01755 (DLK06_01755) gmk 364012..364641 (-) 630 WP_005804544.1 guanylate kinase -
  DLK06_RS01760 (DLK06_01760) ispH 364764..365714 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DLK06_RS01765 (DLK06_01765) fimU 365884..366357 (+) 474 WP_032057265.1 pilus assembly FimT family protein Machinery gene
  DLK06_RS01770 (DLK06_01770) pilV 366351..366911 (+) 561 WP_080777128.1 type IV pilus modification protein PilV Machinery gene
  DLK06_RS01775 (DLK06_01775) pilW 366911..367912 (+) 1002 WP_032057268.1 PilW family protein Machinery gene
  DLK06_RS01780 (DLK06_01780) pilX 367909..368718 (+) 810 WP_005067126.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DLK06_RS01785 (DLK06_01785) pilY1 368730..372584 (+) 3855 WP_032057269.1 PilC/PilY family type IV pilus protein Machinery gene
  DLK06_RS01790 (DLK06_01790) pilY2 372595..373077 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  DLK06_RS01795 (DLK06_01795) pilE 373074..373499 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.35 Da        Isoelectric Point: 7.7238

>NTDB_id=294178 DLK06_RS01780 WP_005067126.1 367909..368718(+) (pilX) [Acinetobacter pittii strain ST220]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=294178 DLK06_RS01780 WP_005067126.1 367909..368718(+) (pilX) [Acinetobacter pittii strain ST220]
ATGACCCATTTAATTCATAAAAGTCGATCTAAAGAAAAAGGGGCAACCCTTATTGTTGTACTTATTATTTTATTAATTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACCAATGTGATT
GGCGCCGCGCTCAAAGAGCATGAAAGTAACCCAGGCGCAGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAAACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATCCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGCATGTT
GTCTACGCAACGTATTCGAGTGATCACAACTGCGTTTTTGCCAGCCTATGCTTCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAATGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NM66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907

Multiple sequence alignment