Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DL538_RS21995 Genome accession   NZ_CP029609
Coordinates   4199001..4199519 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194001..4204519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS21965 (DL538_21840) yyaJ 4194504..4195859 (+) 1356 WP_131228310.1 MFS transporter -
  DL538_RS21970 (DL538_21845) maa 4195893..4196447 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  DL538_RS21975 (DL538_21850) yyaH 4196465..4196845 (-) 381 WP_003244460.1 VOC family protein -
  DL538_RS21980 (DL538_21855) ccpB 4196901..4197836 (-) 936 WP_131228311.1 transcriptional regulator CcpB -
  DL538_RS21985 (DL538_21860) xth 4197896..4198654 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  DL538_RS21990 (DL538_21865) rpsR 4198718..4198957 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  DL538_RS21995 (DL538_21870) ssbA 4199001..4199519 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  DL538_RS22000 (DL538_21875) rpsF 4199560..4199847 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  DL538_RS22005 (DL538_21880) ychF 4199958..4201058 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  DL538_RS22010 (DL538_21885) yyaE 4201185..4203188 (-) 2004 WP_072173959.1 molybdopterin-dependent oxidoreductase -
  DL538_RS22015 (DL538_21890) yyzM 4203239..4203445 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=294166 DL538_RS21995 WP_003219228.1 4199001..4199519(-) (ssbA) [Bacillus subtilis subsp. subtilis strain G7]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=294166 DL538_RS21995 WP_003219228.1 4199001..4199519(-) (ssbA) [Bacillus subtilis subsp. subtilis strain G7]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment