Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   DL538_RS20095 Genome accession   NZ_CP029609
Coordinates   3839790..3839909 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3834790..3844909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS20070 (DL538_19965) albG 3834953..3835654 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  DL538_RS20075 (DL538_19970) ywhL 3835660..3837036 (-) 1377 WP_131228202.1 YncE family protein -
  DL538_RS20080 (DL538_19975) ywhK 3837076..3838431 (-) 1356 WP_131228203.1 YncE family protein -
  DL538_RS20090 (DL538_19985) rapF 3838661..3839806 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  DL538_RS20095 (DL538_19990) phrF 3839790..3839909 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  DL538_RS20100 (DL538_19995) - 3840162..3840641 (+) 480 WP_015714892.1 hypothetical protein -
  DL538_RS20105 (DL538_20000) - 3840790..3841578 (+) 789 WP_015714893.1 membrane protein -
  DL538_RS20110 (DL538_20005) - 3841565..3842239 (+) 675 WP_015714894.1 hypothetical protein -
  DL538_RS20115 (DL538_20010) - 3842249..3843046 (+) 798 WP_231573542.1 hypothetical protein -
  DL538_RS20120 (DL538_20015) - 3843049..3843696 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  DL538_RS20125 (DL538_20020) - 3843689..3844249 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=294163 DL538_RS20095 WP_009968329.1 3839790..3839909(+) (phrF) [Bacillus subtilis subsp. subtilis strain G7]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=294163 DL538_RS20095 WP_009968329.1 3839790..3839909(+) (phrF) [Bacillus subtilis subsp. subtilis strain G7]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment