Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AM1_RS25605 Genome accession   NC_009925
Coordinates   5725710..5727182 (-) Length   490 a.a.
NCBI ID   WP_012165828.1    Uniprot ID   -
Organism   Acaryochloris marina MBIC11017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5720710..5732182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM1_RS25580 (AM1_5657) - 5721194..5722612 (+) 1419 WP_012162310.1 IS4-like element ISAcma16 family transposase -
  AM1_RS25585 (AM1_5658) - 5722619..5723656 (-) 1038 WP_012161146.1 IS701-like element ISAcma42 family transposase -
  AM1_RS25590 (AM1_5659) - 5723712..5724389 (-) 678 WP_269150238.1 formylglycine-generating enzyme family protein -
  AM1_RS25595 (AM1_5660) - 5724527..5725243 (-) 717 WP_012165826.1 DNA alkylation repair protein -
  AM1_RS25600 (AM1_5661) - 5725233..5725523 (-) 291 WP_012165827.1 DUF4090 family protein -
  AM1_RS25605 (AM1_5662) radA 5725710..5727182 (-) 1473 WP_012165828.1 DNA repair protein RadA Machinery gene
  AM1_RS25610 (AM1_5663) rpaB 5727341..5728072 (+) 732 WP_010477475.1 response regulator transcription factor RpaB -
  AM1_RS25615 (AM1_5664) - 5728150..5728932 (-) 783 WP_012165829.1 TetR/AcrR family transcriptional regulator -
  AM1_RS25620 (AM1_5665) - 5728982..5729986 (+) 1005 WP_012165830.1 Rieske 2Fe-2S domain-containing protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 52651.49 Da        Isoelectric Point: 7.6803

>NTDB_id=29416 AM1_RS25605 WP_012165828.1 5725710..5727182(-) (radA) [Acaryochloris marina MBIC11017]
MAKIRTHYICQECGAASPQFFGKCPSCHTWNSLVEQVVPNTPAATDGTRLAQRHRQRQNTSPKALSSLTLAQISEQPIQR
FSSGYSELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQIVNFLSARQTVLYVCAEESGQQVKLRAQRLGIGTLNLNKEIT
DPPPKSKDKSANADLYLLPETDLEMVLQELDSLQPQVAIIDSIQALFFSTLTSAPGSVAQVRECTSALMRLAKRNHITLF
IVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFANHRLLRSVKNRFGATHEVGVFEMIDRGLREVLNPSELFLGDREEVSP
GTATIVACEGTRPIVVELQALVSPTSYSSPRRSTTGIEYNRLLQILAVLEKRLGIPLSKLDAYVASSGGLSVAEPAADLG
VAIALAASFRDRLVDPTTVVIGEVGLGGQVRSVSQTELRLKEALKLGFKRAIIPKGQSFPSLDIEVIPVARVADAIVAAL
PGGSSAHSTE

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=29416 AM1_RS25605 WP_012165828.1 5725710..5727182(-) (radA) [Acaryochloris marina MBIC11017]
ATGGCAAAAATACGAACTCATTACATTTGCCAAGAATGTGGTGCAGCTTCTCCTCAGTTTTTTGGTAAATGTCCCTCCTG
TCACACTTGGAATTCTTTGGTCGAACAAGTGGTGCCAAATACACCGGCGGCAACCGACGGAACCCGCTTGGCACAACGAC
ATCGCCAACGTCAAAACACTTCACCCAAGGCACTTTCCTCCCTGACTTTGGCCCAAATCTCTGAGCAGCCAATTCAGCGG
TTTAGCTCCGGTTATAGTGAACTCGATCGGGTGTTAGGAGGCGGTATTGTTCCCGGTTCCCTGGTGTTGGTGGGCGGTGA
TCCGGGAATTGGTAAATCGACTCTTTTGTTGCAAATTGTCAACTTTTTAAGTGCCCGACAAACGGTTCTCTATGTTTGTG
CAGAAGAATCTGGCCAACAGGTTAAATTGCGTGCCCAGCGATTGGGAATTGGAACCTTAAATTTAAATAAAGAAATCACG
GATCCACCTCCCAAATCAAAAGACAAATCCGCAAATGCCGATTTATACCTGTTGCCGGAAACGGATTTAGAAATGGTGTT
GCAAGAACTAGATTCCCTGCAACCGCAAGTGGCCATTATTGATAGTATTCAAGCCCTATTTTTCTCCACTTTAACGTCGG
CTCCTGGCTCTGTTGCCCAGGTGAGGGAATGCACATCAGCCCTGATGCGCTTGGCGAAACGGAACCACATTACATTGTTT
ATCGTTGGCCATGTCACGAAGGAAGGTGCCATCGCCGGTCCCAAGGTTTTAGAACATTTAGTGGATACGGTGCTCTACTT
TGAAGGGGATCGATTTGCCAATCACCGATTACTCCGATCCGTCAAAAATCGGTTTGGCGCAACTCACGAAGTCGGTGTAT
TTGAAATGATTGATCGGGGCTTGCGGGAAGTCTTGAATCCATCGGAGTTATTTTTGGGCGATCGTGAAGAGGTATCGCCC
GGAACAGCCACTATCGTGGCTTGTGAAGGCACCCGCCCCATTGTGGTGGAACTACAGGCCTTGGTTAGCCCCACCAGCTA
CAGTTCACCTCGCCGCTCAACGACAGGGATTGAATATAATCGGTTGCTGCAAATTCTGGCGGTGTTAGAGAAACGGCTGG
GCATTCCTCTGTCTAAGCTGGATGCCTATGTGGCCTCTTCCGGCGGATTGAGTGTGGCTGAACCTGCGGCAGATTTGGGA
GTTGCGATCGCACTGGCAGCCAGCTTCCGTGATCGCCTGGTAGACCCTACCACCGTTGTGATTGGTGAAGTGGGATTGGG
GGGGCAAGTTCGCTCCGTATCGCAAACCGAACTACGGCTCAAAGAAGCCCTGAAACTAGGATTTAAACGGGCCATCATTC
CCAAAGGCCAGTCTTTTCCCAGTCTGGATATAGAAGTCATCCCCGTCGCCCGAGTTGCCGACGCCATTGTGGCCGCCCTG
CCGGGTGGATCATCGGCTCATTCGACAGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(396-455)

KaiC (ATPase)

(83-284)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.719

99.388

0.504
  radA Streptococcus pneumoniae Rx1

46.042

97.959

0.451
  radA Streptococcus pneumoniae D39

46.042

97.959

0.451
  radA Streptococcus pneumoniae R6

46.042

97.959

0.451
  radA Streptococcus pneumoniae TIGR4

46.042

97.959

0.451
  radA Streptococcus mitis SK321

45.929

97.755

0.449
  radA Streptococcus mitis NCTC 12261

45.929

97.755

0.449

Multiple sequence alignment