Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DL538_RS19030 Genome accession   NZ_CP029609
Coordinates   3632065..3632754 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627065..3637754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS18995 (DL538_18890) flgN 3627246..3627728 (-) 483 WP_131228158.1 flagellar protein FlgN -
  DL538_RS19000 (DL538_18895) flgM 3627744..3628010 (-) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  DL538_RS19005 (DL538_18900) yvyF 3628091..3628510 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  DL538_RS19010 (DL538_18905) comFC 3628584..3629306 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  DL538_RS19015 (DL538_18910) comFB 3629270..3629566 (-) 297 WP_015483764.1 late competence protein ComFB -
  DL538_RS19020 (DL538_18915) comFA 3629626..3631016 (-) 1391 Protein_3684 ATP-dependent helicase ComFA -
  DL538_RS19025 (DL538_18920) fakBA 3631122..3631967 (-) 846 WP_003227986.1 DegV family protein -
  DL538_RS19030 (DL538_18925) degU 3632065..3632754 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DL538_RS19035 (DL538_18930) degS 3632837..3633994 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  DL538_RS19040 (DL538_18935) yvyE 3634211..3634864 (+) 654 WP_003227979.1 YigZ family protein -
  DL538_RS19045 (DL538_18940) tagV 3634864..3636039 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  DL538_RS19050 (DL538_18945) tagO 3636112..3637188 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=294157 DL538_RS19030 WP_003219701.1 3632065..3632754(-) (degU) [Bacillus subtilis subsp. subtilis strain G7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=294157 DL538_RS19030 WP_003219701.1 3632065..3632754(-) (degU) [Bacillus subtilis subsp. subtilis strain G7]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment