Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   DL538_RS14710 Genome accession   NZ_CP029609
Coordinates   2807386..2808132 (-) Length   248 a.a.
NCBI ID   WP_131228346.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2802386..2813132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS14680 (DL538_14585) - 2802711..2803148 (+) 438 WP_131227795.1 helix-turn-helix transcriptional regulator -
  DL538_RS14685 (DL538_14590) - 2803162..2803608 (+) 447 WP_060399203.1 ImmA/IrrE family metallo-endopeptidase -
  DL538_RS14690 (DL538_14595) - 2803639..2805075 (+) 1437 WP_164906785.1 recombinase family protein -
  DL538_RS14695 (DL538_14600) radC 2805094..2805495 (-) 402 Protein_2849 DNA repair protein RadC -
  DL538_RS14700 (DL538_14605) maf 2805532..2806101 (-) 570 WP_049141066.1 Maf family nucleotide pyrophosphatase -
  DL538_RS14705 (DL538_14610) spoIIB 2806254..2807252 (-) 999 WP_103803774.1 stage II sporulation protein SpoIIB -
  DL538_RS14710 (DL538_14615) comC 2807386..2808132 (-) 747 WP_131228346.1 A24 family peptidase Machinery gene
  DL538_RS14715 (DL538_14620) folC 2808272..2809564 (-) 1293 WP_076458221.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  DL538_RS14720 (DL538_14625) valS 2809624..2812266 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  DL538_RS14725 (DL538_14630) - 2812714..2812905 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26449.02 Da        Isoelectric Point: 9.7944

>NTDB_id=294146 DL538_RS14710 WP_131228346.1 2807386..2808132(-) (comC) [Bacillus subtilis subsp. subtilis strain G7]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGPSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=294146 DL538_RS14710 WP_131228346.1 2807386..2808132(-) (comC) [Bacillus subtilis subsp. subtilis strain G7]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCCCGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTAACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment