Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   DL538_RS11530 Genome accession   NZ_CP029609
Coordinates   2266571..2267191 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2261571..2272191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS11490 (DL538_11440) ptsA 2262703..2263209 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  DL538_RS11495 (DL538_11445) ypqA 2263347..2263766 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  DL538_RS11500 (DL538_11450) sppG 2263787..2264164 (-) 378 WP_004398696.1 YppG family protein -
  DL538_RS11505 (DL538_11455) yppF 2264351..2264539 (+) 189 WP_003230690.1 YppF family protein -
  DL538_RS11510 (DL538_11460) yppE 2264578..2264949 (-) 372 WP_003246080.1 YppE family protein -
  DL538_RS11515 (DL538_11465) yppD 2264995..2265240 (-) 246 WP_004398488.1 YppD family protein -
  DL538_RS11520 (DL538_11470) sspM 2265439..2265543 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  DL538_RS11525 (DL538_11475) yppC 2265568..2266530 (-) 963 WP_131227527.1 DUF2515 domain-containing protein -
  DL538_RS11530 (DL538_11480) recU 2266571..2267191 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  DL538_RS11535 (DL538_11485) ponA 2267213..2269957 (+) 2745 WP_131227529.1 PBP1A family penicillin-binding protein -
  DL538_RS11540 (DL538_11490) ypoC 2270033..2270527 (-) 495 WP_029726783.1 YpoC family protein -
  DL538_RS11545 (DL538_11495) nth 2270524..2271183 (-) 660 WP_009967580.1 endonuclease III -
  DL538_RS11550 (DL538_11500) dnaD 2271202..2271900 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=294126 DL538_RS11530 WP_004399067.1 2266571..2267191(+) (recU) [Bacillus subtilis subsp. subtilis strain G7]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=294126 DL538_RS11530 WP_004399067.1 2266571..2267191(+) (recU) [Bacillus subtilis subsp. subtilis strain G7]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment