Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   DL538_RS08070 Genome accession   NZ_CP029609
Coordinates   1510164..1510739 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1505164..1515739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS08040 (DL538_08020) dapD 1505350..1506060 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  DL538_RS08045 (DL538_08025) dapI 1506130..1507254 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  DL538_RS08050 (DL538_08030) ykuS 1507316..1507561 (+) 246 WP_003232382.1 YkuS family protein -
  DL538_RS08055 (DL538_08035) mscT 1507598..1508401 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  DL538_RS08060 (DL538_08040) ahpA 1508638..1509180 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  DL538_RS08065 (DL538_08045) ykuV 1509252..1509698 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  DL538_RS08070 (DL538_08050) rok 1510164..1510739 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  DL538_RS08075 (DL538_08055) cse15 1510780..1511745 (-) 966 WP_041335771.1 spore protein Cse15 -
  DL538_RS08080 (DL538_08060) mobA 1511882..1512481 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  DL538_RS08085 (DL538_08065) moeB 1512532..1513551 (+) 1020 WP_044052540.1 molybdopterin-synthase adenylyltransferase MoeB -
  DL538_RS08090 (DL538_08070) glp 1513569..1514861 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  DL538_RS08095 (DL538_08075) mobB 1514822..1515343 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=294119 DL538_RS08070 WP_003232378.1 1510164..1510739(+) (rok) [Bacillus subtilis subsp. subtilis strain G7]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=294119 DL538_RS08070 WP_003232378.1 1510164..1510739(+) (rok) [Bacillus subtilis subsp. subtilis strain G7]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCTAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment