Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   DL538_RS07960 Genome accession   NZ_CP029609
Coordinates   1490935..1491399 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1485935..1496399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS07940 (DL538_07920) kinA 1486401..1488221 (+) 1821 WP_080529263.1 sporulation histidine kinase KinA -
  DL538_RS07945 (DL538_07925) dapX 1488232..1489413 (-) 1182 WP_014479654.1 aminotransferase A -
  DL538_RS07950 (DL538_07930) - 1489615..1489776 (-) 162 WP_003245246.1 hypothetical protein -
  DL538_RS07955 (DL538_07935) cheV 1489980..1490891 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  DL538_RS07960 (DL538_07940) kre 1490935..1491399 (-) 465 WP_003232406.1 YkyB family protein Regulator
  DL538_RS07965 (DL538_07945) ykuC 1491525..1492817 (-) 1293 WP_003245267.1 MFS transporter -
  DL538_RS07970 (DL538_07950) ltdD 1492893..1493387 (-) 495 WP_010886500.1 L,D-transpeptidase family protein -
  DL538_RS07975 (DL538_07955) ppeE 1493444..1494304 (-) 861 WP_131227371.1 metallophosphoesterase -
  DL538_RS07980 (DL538_07960) fadH 1494447..1495211 (+) 765 WP_131227372.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=294118 DL538_RS07960 WP_003232406.1 1490935..1491399(-) (kre) [Bacillus subtilis subsp. subtilis strain G7]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=294118 DL538_RS07960 WP_003232406.1 1490935..1491399(-) (kre) [Bacillus subtilis subsp. subtilis strain G7]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment