Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   DL538_RS06040 Genome accession   NZ_CP029609
Coordinates   1134322..1134900 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129322..1139900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS06020 (DL538_06010) hemAT 1129833..1131131 (-) 1299 WP_131227284.1 heme-based aerotactic transducer HemAT -
  DL538_RS06025 (DL538_06015) comW 1131270..1132799 (-) 1530 WP_131227285.1 FAD-dependent oxidoreductase -
  DL538_RS06030 (DL538_06020) yhxC 1132911..1133768 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  DL538_RS06035 (DL538_06025) yhzC 1133796..1134029 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  DL538_RS06040 (DL538_06030) comK 1134322..1134900 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  DL538_RS06045 (DL538_06035) yhxD 1134947..1135846 (-) 900 WP_131227286.1 SDR family oxidoreductase -
  DL538_RS06050 (DL538_06040) yhjA 1136064..1136333 (+) 270 WP_072173850.1 excalibur calcium-binding domain-containing protein -
  DL538_RS06055 (DL538_06045) yhjB 1136377..1137846 (-) 1470 WP_014479374.1 sodium:solute symporter -
  DL538_RS06060 (DL538_06050) yhjC 1137843..1138043 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  DL538_RS06065 (DL538_06055) - 1138251..1138613 (-) 363 WP_024571727.1 hypothetical protein -
  DL538_RS06070 (DL538_06060) yhjE 1138765..1139388 (+) 624 WP_010886465.1 VTT domain-containing protein -
  DL538_RS06075 (DL538_06065) lepB 1139390..1139896 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=294106 DL538_RS06040 WP_003245329.1 1134322..1134900(+) (comK) [Bacillus subtilis subsp. subtilis strain G7]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=294106 DL538_RS06040 WP_003245329.1 1134322..1134900(+) (comK) [Bacillus subtilis subsp. subtilis strain G7]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment