Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DLD99_RS24875 Genome accession   NZ_CP029608
Coordinates   5446091..5447458 (-) Length   455 a.a.
NCBI ID   WP_114885656.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain 46-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5441091..5452458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD99_RS24850 (DLD99_24845) - 5441514..5442209 (+) 696 WP_114885651.1 GntR family transcriptional regulator -
  DLD99_RS24855 (DLD99_24850) yjiA 5442223..5443194 (-) 972 WP_114885653.1 GTPase -
  DLD99_RS24860 (DLD99_24855) - 5443284..5443481 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  DLD99_RS24865 (DLD99_24860) - 5443497..5445563 (-) 2067 WP_114885654.1 carbon starvation CstA family protein -
  DLD99_RS24870 (DLD99_24865) - 5445722..5446090 (+) 369 WP_085712214.1 PilZ domain-containing protein -
  DLD99_RS24875 (DLD99_24870) radA 5446091..5447458 (-) 1368 WP_114885656.1 DNA repair protein RadA Machinery gene
  DLD99_RS24880 (DLD99_24875) katB 5447602..5449143 (-) 1542 WP_114885658.1 catalase KatB -
  DLD99_RS24885 (DLD99_24880) mscL 5449428..5449841 (+) 414 WP_085712217.1 large-conductance mechanosensitive channel protein MscL -
  DLD99_RS24890 (DLD99_24885) - 5449874..5450650 (-) 777 WP_114885660.1 ferredoxin--NADP reductase -
  DLD99_RS24895 (DLD99_24890) - 5450970..5451682 (+) 713 Protein_4881 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48689.13 Da        Isoelectric Point: 6.8987

>NTDB_id=294078 DLD99_RS24875 WP_114885656.1 5446091..5447458(-) (radA) [Pseudomonas kribbensis strain 46-2]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=294078 DLD99_RS24875 WP_114885656.1 5446091..5447458(-) (radA) [Pseudomonas kribbensis strain 46-2]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGCACCGGCTGGGCAG
GGCAGCAGGCCCAGATCAAGACTCTGGCCGAAGTCAGCATCGAAGAGATTCCGCGTTTTTCCACAGCCTCCGGCGAGCTC
GACCGAGTGCTTGGCGGCGGTCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGTGATCCGGGTATCGGCAAATCGACGAT
TCTGCTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGTGAGGAATCCCAGCAGCAAGTCG
CCATGCGCGCACGTCGACTTGGGCTGCCGCAGGATCAACTGCGGGTCATGACTGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
GGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGTTGCTGGTGCGCTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGTCACGTGACCAAGGAAGGCGCATTGGCCGGCCCGCGTGTTCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGGTTGCGCCTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAACTCGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCAGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGTCATCTGGCC
AACCCGCGTCGGGTCACGCTGGGTCTGGATCAGAATCGTCTGGCGATGTTGCTGGCGGTGTTGCATCGCCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCTGCGGTCATGTCGAGCTTGCGCAACCGGCCGTTGCCCCACGATTTGCTGGTGTTCGGCGAAGTCGGCCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGTGGTCAGGAGCGTTTGAAAGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAACGCGCCAAAAGAAGCGCCGGCAGGGTTGCAGATCATTGCGGTAACGCGTCTGGAGCAGGCGCTGGATTCACTCT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment