Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   EQJ84_RS08095 Genome accession   NZ_CP035191
Coordinates   1544348..1545373 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SRCM104011     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1539348..1550373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ84_RS08060 (EQJ84_08060) ylbE 1539648..1539887 (+) 240 WP_003232231.1 YlbE-like family protein -
  EQJ84_RS08065 (EQJ84_08065) ylbF 1540003..1540452 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  EQJ84_RS08070 (EQJ84_08070) ylbG 1540507..1540779 (+) 273 WP_015715839.1 YlbG family protein -
  EQJ84_RS08075 (EQJ84_08075) rsmD 1541102..1541656 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EQJ84_RS08080 (EQJ84_08080) coaD 1541661..1542146 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  EQJ84_RS08085 (EQJ84_08085) spoVV 1542157..1543383 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  EQJ84_RS08090 (EQJ84_08090) ylbK 1543564..1544346 (+) 783 WP_003232221.1 patatin family protein -
  EQJ84_RS08095 (EQJ84_08095) sepM 1544348..1545373 (+) 1026 WP_003245451.1 protease DdcP Regulator
  EQJ84_RS08100 (EQJ84_08100) tmcAL 1545390..1546637 (-) 1248 WP_128441609.1 nucleotidyltransferase -
  EQJ84_RS08105 (EQJ84_08105) - 1546634..1546819 (-) 186 WP_003232215.1 hypothetical protein -
  EQJ84_RS08110 (EQJ84_08110) ylbN 1546847..1547365 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  EQJ84_RS08115 (EQJ84_08115) rpmF 1547387..1547566 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  EQJ84_RS08120 (EQJ84_08120) gerR 1547711..1548292 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  EQJ84_RS08125 (EQJ84_08125) ylbP 1548349..1548831 (-) 483 WP_014476736.1 N-acetyltransferase -
  EQJ84_RS08130 (EQJ84_08130) panEA 1548991..1549887 (+) 897 WP_128441611.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=294068 EQJ84_RS08095 WP_003245451.1 1544348..1545373(+) (sepM) [Bacillus subtilis strain SRCM104011]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=294068 EQJ84_RS08095 WP_003245451.1 1544348..1545373(+) (sepM) [Bacillus subtilis strain SRCM104011]
TTGCTACGAAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCTGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402