Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | C1M51_RS05775 | Genome accession | NZ_CP029606 |
| Coordinates | 1223818..1224870 (-) | Length | 350 a.a. |
| NCBI ID | WP_129448624.1 | Uniprot ID | A0A4V0YMU5 |
| Organism | Methylibium sp. Pch-M | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1218818..1229870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1M51_RS05755 (C1M51_05710) | - | 1220343..1220573 (-) | 231 | WP_129448620.1 | PP0621 family protein | - |
| C1M51_RS05760 (C1M51_05715) | - | 1220619..1221443 (-) | 825 | WP_129448621.1 | inner membrane protein YpjD | - |
| C1M51_RS05765 (C1M51_05720) | ffh | 1221550..1222923 (+) | 1374 | WP_129448622.1 | signal recognition particle protein | - |
| C1M51_RS05770 (C1M51_05725) | - | 1223004..1223801 (+) | 798 | WP_129448623.1 | DUF2726 domain-containing protein | - |
| C1M51_RS05775 (C1M51_05730) | pilA | 1223818..1224870 (-) | 1053 | WP_129448624.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| C1M51_RS05780 (C1M51_05735) | rsmD | 1225001..1225615 (+) | 615 | WP_129448625.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| C1M51_RS05785 (C1M51_05740) | coaD | 1225702..1226151 (+) | 450 | WP_242500034.1 | pantetheine-phosphate adenylyltransferase | - |
| C1M51_RS05790 (C1M51_05745) | - | 1226228..1226527 (+) | 300 | WP_129448627.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| C1M51_RS05795 (C1M51_05750) | - | 1226543..1227007 (-) | 465 | WP_129448628.1 | hypothetical protein | - |
| C1M51_RS05800 (C1M51_05755) | pth | 1227016..1227714 (-) | 699 | WP_129448629.1 | aminoacyl-tRNA hydrolase | - |
| C1M51_RS05805 (C1M51_05760) | - | 1228170..1228817 (-) | 648 | WP_129448630.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 36631.27 Da Isoelectric Point: 8.0852
>NTDB_id=294045 C1M51_RS05775 WP_129448624.1 1223818..1224870(-) (pilA) [Methylibium sp. Pch-M]
MFSFFKKKAPVAAPPPTGPEAPAASAPSPGPAAEVGAAAAAPAEQRRPWLDRLKSGLRRTGSSITQVFTGTRIDEALYEE
LEAALLMADAGMPATQHLLADLKRRVKEHKATDPAAVKLLLIDALAELLAPLQRPLVLGETRPTVIMVAGVNGAGKTTSI
GKLTRHLADGGLKVLLAAADTFRAAAKEQLAVWADRNRVEIVSQEGGDPAAVSFDAVKAGQARGCDVVVADTAGRLPTQV
HLMEELRKIKRTIGKAMDGAPHEVLLVVDGNTGQNALAQVKAFDAVLGLTGLVVTKLDGTAKGGVLAAIALWSRERDGAS
PVPVYFIGVGEKLADLETFDAREFSQALLT
MFSFFKKKAPVAAPPPTGPEAPAASAPSPGPAAEVGAAAAAPAEQRRPWLDRLKSGLRRTGSSITQVFTGTRIDEALYEE
LEAALLMADAGMPATQHLLADLKRRVKEHKATDPAAVKLLLIDALAELLAPLQRPLVLGETRPTVIMVAGVNGAGKTTSI
GKLTRHLADGGLKVLLAAADTFRAAAKEQLAVWADRNRVEIVSQEGGDPAAVSFDAVKAGQARGCDVVVADTAGRLPTQV
HLMEELRKIKRTIGKAMDGAPHEVLLVVDGNTGQNALAQVKAFDAVLGLTGLVVTKLDGTAKGGVLAAIALWSRERDGAS
PVPVYFIGVGEKLADLETFDAREFSQALLT
Nucleotide
Download Length: 1053 bp
>NTDB_id=294045 C1M51_RS05775 WP_129448624.1 1223818..1224870(-) (pilA) [Methylibium sp. Pch-M]
ATGTTCAGTTTCTTCAAGAAGAAGGCGCCGGTCGCGGCGCCACCGCCGACCGGCCCCGAGGCGCCAGCAGCATCCGCACC
GTCTCCCGGGCCTGCTGCCGAAGTCGGCGCGGCTGCTGCGGCGCCTGCCGAACAGCGCCGCCCCTGGCTCGACCGGCTCA
AGAGCGGGCTGCGGCGCACCGGATCCAGCATCACGCAGGTGTTCACCGGAACGCGCATCGACGAGGCGCTGTACGAGGAA
CTCGAGGCGGCGCTGCTGATGGCCGACGCCGGCATGCCCGCCACGCAGCACCTGCTCGCCGACCTGAAGCGGCGTGTCAA
GGAGCACAAGGCCACCGATCCTGCCGCGGTGAAGTTATTGCTGATCGACGCGCTGGCCGAACTGCTTGCGCCCCTGCAGC
GGCCTCTGGTGCTGGGCGAGACGCGGCCGACGGTAATCATGGTCGCGGGTGTCAACGGCGCGGGCAAGACGACCAGCATC
GGCAAGCTCACGCGCCACCTCGCCGACGGCGGTCTGAAGGTGCTGCTGGCGGCGGCTGACACCTTCCGCGCCGCCGCGAA
GGAGCAACTCGCGGTGTGGGCGGACCGCAACCGCGTCGAGATCGTCAGCCAGGAAGGCGGCGACCCGGCCGCGGTGAGCT
TCGATGCCGTGAAGGCCGGCCAGGCCCGCGGCTGCGATGTGGTCGTCGCCGACACCGCCGGCCGCCTGCCGACGCAGGTG
CACCTGATGGAAGAGCTGCGCAAGATCAAGCGAACCATCGGCAAGGCCATGGACGGCGCGCCGCACGAGGTGCTGCTGGT
GGTGGACGGCAACACCGGGCAGAACGCGCTGGCCCAGGTCAAGGCCTTCGATGCCGTGCTGGGGCTGACCGGGCTGGTCG
TCACCAAGCTCGACGGCACGGCCAAGGGCGGGGTGCTGGCGGCGATCGCGCTGTGGTCGCGCGAGCGTGACGGTGCGTCG
CCGGTGCCGGTCTATTTCATCGGCGTGGGCGAGAAGCTCGCGGATCTGGAGACTTTCGACGCGCGCGAGTTCTCGCAGGC
GCTGCTGACCTGA
ATGTTCAGTTTCTTCAAGAAGAAGGCGCCGGTCGCGGCGCCACCGCCGACCGGCCCCGAGGCGCCAGCAGCATCCGCACC
GTCTCCCGGGCCTGCTGCCGAAGTCGGCGCGGCTGCTGCGGCGCCTGCCGAACAGCGCCGCCCCTGGCTCGACCGGCTCA
AGAGCGGGCTGCGGCGCACCGGATCCAGCATCACGCAGGTGTTCACCGGAACGCGCATCGACGAGGCGCTGTACGAGGAA
CTCGAGGCGGCGCTGCTGATGGCCGACGCCGGCATGCCCGCCACGCAGCACCTGCTCGCCGACCTGAAGCGGCGTGTCAA
GGAGCACAAGGCCACCGATCCTGCCGCGGTGAAGTTATTGCTGATCGACGCGCTGGCCGAACTGCTTGCGCCCCTGCAGC
GGCCTCTGGTGCTGGGCGAGACGCGGCCGACGGTAATCATGGTCGCGGGTGTCAACGGCGCGGGCAAGACGACCAGCATC
GGCAAGCTCACGCGCCACCTCGCCGACGGCGGTCTGAAGGTGCTGCTGGCGGCGGCTGACACCTTCCGCGCCGCCGCGAA
GGAGCAACTCGCGGTGTGGGCGGACCGCAACCGCGTCGAGATCGTCAGCCAGGAAGGCGGCGACCCGGCCGCGGTGAGCT
TCGATGCCGTGAAGGCCGGCCAGGCCCGCGGCTGCGATGTGGTCGTCGCCGACACCGCCGGCCGCCTGCCGACGCAGGTG
CACCTGATGGAAGAGCTGCGCAAGATCAAGCGAACCATCGGCAAGGCCATGGACGGCGCGCCGCACGAGGTGCTGCTGGT
GGTGGACGGCAACACCGGGCAGAACGCGCTGGCCCAGGTCAAGGCCTTCGATGCCGTGCTGGGGCTGACCGGGCTGGTCG
TCACCAAGCTCGACGGCACGGCCAAGGGCGGGGTGCTGGCGGCGATCGCGCTGTGGTCGCGCGAGCGTGACGGTGCGTCG
CCGGTGCCGGTCTATTTCATCGGCGTGGGCGAGAAGCTCGCGGATCTGGAGACTTTCGACGCGCGCGAGTTCTCGCAGGC
GCTGCTGACCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
54.627 |
95.714 |
0.523 |