Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AM1_RS02395 Genome accession   NC_009925
Coordinates   535123..536811 (-) Length   562 a.a.
NCBI ID   WP_012161201.1    Uniprot ID   B0CC58
Organism   Acaryochloris marina MBIC11017     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530123..541811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM1_RS02385 (AM1_0548) - 530576..532939 (-) 2364 WP_012161199.1 EAL domain-containing protein -
  AM1_RS02390 (AM1_0549) hemL 533561..534859 (-) 1299 WP_012161200.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AM1_RS02395 (AM1_0550) comA 535123..536811 (-) 1689 WP_012161201.1 phospholipase D-like domain-containing protein Machinery gene
  AM1_RS02400 (AM1_0551) - 536823..537545 (-) 723 WP_012161202.1 YSC84-related protein -
  AM1_RS02405 (AM1_0552) - 537808..540255 (+) 2448 WP_238549145.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  AM1_RS43005 - 540274..541254 (-) 981 WP_238549146.1 hypothetical protein -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 62427.35 Da        Isoelectric Point: 6.4480

>NTDB_id=29399 AM1_RS02395 WP_012161201.1 535123..536811(-) (comA) [Acaryochloris marina MBIC11017]
MQRLQLGLASLVLLGALGIGVNRWQRSQPQFKSIEPLPQHSQIQVYMNQSLANSFTDPYRQITRPGDDLESIIVENIQAA
QSTVDVAIQELRSPRIAQALRDRKQAGVQVRVVLENTYSRPWSSFTPQEVARMDPRQKDRYQANFQLIDQDQDGQLSSSE
INDNDALEVLRQADIPWLDDTADGSAGSGLMHHKFVVIDGQTILVTTANFTLSGLLGDLDQPDSRGNANSLVVLKNPAVA
QLFTEEFKAMWGDGPGRATDSKFGVNKPWRPTQTLKVGDAKVQVQFSPTSVSTPWSRSTNGLIRQTLAKATQDIALALFV
FSEQPLVDQLAVEDHQGVKIRVLGDPQFAYQSYSEVLDMLGVALSSSRSGTLTCQAEPQNRPWSQPLQTVGTPQLPKGDV
LHHKFGIVDGRIVIVGSHNWSDAANRRNDETLLVIEHPQIADHYHREFERLYASSRLGIPTFLHNKAQDHQRQCGDLQLH
VRGTPQPVWLGKEQTAPVNSSLVNLNTASQQELEALPGVGPKLAARIIEVRQERLFTSLADFDQVPGIGPKLLEQLRNKV
TW

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=29399 AM1_RS02395 WP_012161201.1 535123..536811(-) (comA) [Acaryochloris marina MBIC11017]
ATGCAGCGACTGCAATTGGGATTAGCTTCCCTTGTCCTACTGGGTGCTCTGGGGATTGGGGTTAATCGTTGGCAGCGATC
GCAACCGCAATTCAAATCCATCGAACCTCTCCCACAACATAGCCAGATTCAGGTGTATATGAACCAGAGTCTGGCTAATT
CTTTTACGGATCCTTATCGACAAATCACCCGCCCAGGGGATGATTTAGAGTCGATTATTGTCGAGAATATCCAAGCCGCA
CAATCCACAGTGGATGTAGCGATACAGGAATTGCGATCGCCCCGGATTGCCCAGGCCCTTCGAGATCGCAAACAAGCGGG
TGTTCAGGTCCGAGTGGTCTTAGAAAACACCTACAGCCGACCTTGGAGTAGCTTTACGCCCCAAGAAGTGGCCCGGATGG
ATCCACGGCAAAAAGACCGATACCAAGCCAACTTTCAACTGATCGACCAAGATCAAGATGGCCAGCTGAGTTCGTCTGAA
ATCAATGATAACGATGCCCTAGAGGTACTGCGTCAGGCGGATATCCCCTGGCTAGACGATACGGCCGATGGTTCTGCTGG
CAGTGGACTGATGCACCATAAATTTGTGGTCATTGATGGGCAGACCATCCTTGTGACAACGGCCAACTTTACGTTGTCTG
GCTTGCTCGGCGATTTAGATCAGCCAGATAGTCGAGGAAATGCCAATTCTCTAGTCGTCCTTAAGAACCCAGCTGTCGCT
CAACTCTTTACCGAGGAATTTAAGGCGATGTGGGGAGATGGTCCCGGTCGAGCAACCGATAGCAAATTTGGGGTGAACAA
GCCCTGGCGTCCAACCCAAACTCTTAAGGTGGGTGATGCCAAAGTGCAAGTGCAATTTTCTCCCACATCCGTCTCTACGC
CCTGGTCTCGCAGTACCAACGGTCTGATTCGCCAAACCTTAGCGAAAGCGACACAAGATATTGCGTTGGCGCTATTTGTC
TTTTCAGAGCAACCCCTAGTGGATCAGCTAGCCGTGGAAGACCATCAAGGGGTAAAAATTCGGGTATTGGGTGACCCTCA
GTTTGCCTATCAAAGCTATAGCGAAGTTCTCGATATGTTAGGGGTGGCCCTCAGTTCCTCTCGCAGTGGAACGTTAACAT
GTCAGGCTGAACCCCAAAATCGACCTTGGTCTCAACCCTTGCAAACCGTGGGGACACCTCAACTCCCCAAAGGCGATGTG
CTGCACCATAAATTTGGCATTGTGGATGGCCGGATTGTGATTGTGGGATCTCACAATTGGTCAGATGCTGCCAATCGTCG
CAATGATGAAACCTTACTGGTGATTGAACATCCTCAAATTGCCGATCACTATCATCGGGAATTTGAGCGGTTATATGCCA
GTAGTCGTCTCGGCATTCCGACCTTTCTCCACAACAAAGCCCAAGATCATCAACGCCAATGTGGCGATTTACAGCTCCAT
GTCAGGGGCACTCCCCAACCCGTCTGGCTAGGAAAGGAGCAAACCGCTCCGGTTAATAGCTCCCTCGTAAATTTGAATAC
AGCGAGTCAACAAGAGCTGGAAGCATTACCCGGTGTGGGGCCGAAGTTGGCGGCCCGAATAATCGAGGTGAGGCAAGAAC
GTCTTTTTACCTCCCTTGCAGATTTTGATCAAGTACCTGGCATCGGGCCGAAATTGCTGGAACAGCTACGGAATAAAGTG
ACCTGGTGA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(303-451)

PLD-like domain (PLDc_2)

(73-251)

Helix-hairpin-helix motif (HHH_3)

(498-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0CC58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.399

100

0.484

Multiple sequence alignment