Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DLJ73_RS01235 Genome accession   NZ_CP029597
Coordinates   222535..223131 (-) Length   198 a.a.
NCBI ID   WP_004201433.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae subsp. similipneumoniae strain ATCC 700603     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 217535..228131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ73_RS01220 (DLJ73_01220) helD 217746..219800 (-) 2055 WP_004201438.1 DNA helicase IV -
  DLJ73_RS01225 (DLJ73_01225) - 219925..220371 (+) 447 WP_004201437.1 YccF domain-containing protein -
  DLJ73_RS01230 (DLJ73_01230) yccS 220389..222524 (+) 2136 WP_004201435.1 YccS family putative transporter -
  DLJ73_RS01235 (DLJ73_01235) sxy/tfoX 222535..223131 (-) 597 WP_004201433.1 TfoX/Sxy family DNA transformation protein Regulator
  DLJ73_RS27930 - 223149..223454 (-) 306 WP_153650437.1 hypothetical protein -
  DLJ73_RS01245 (DLJ73_01245) sulA 223480..223989 (+) 510 WP_004201431.1 SOS-induced cell division inhibitor SulA -
  DLJ73_RS01250 (DLJ73_01250) ompA 224342..225412 (+) 1071 WP_004201430.1 porin OmpA -
  DLJ73_RS01255 (DLJ73_01255) matP 225637..226089 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  DLJ73_RS01260 (DLJ73_01260) - 226275..228032 (+) 1758 WP_004201429.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22566.29 Da        Isoelectric Point: 10.1333

>NTDB_id=293959 DLJ73_RS01235 WP_004201433.1 222535..223131(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain ATCC 700603]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=293959 DLJ73_RS01235 WP_004201433.1 222535..223131(-) (sxy/tfoX) [Klebsiella quasipneumoniae subsp. similipneumoniae strain ATCC 700603]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCATTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCCGATGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5

Multiple sequence alignment