Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HAPS_RS05055 Genome accession   NC_011852
Coordinates   1036494..1037099 (+) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis SH0165     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1031494..1042099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAPS_RS05030 (HAPS_1036) tal 1031853..1032803 (-) 951 WP_010786288.1 transaldolase -
  HAPS_RS05035 (HAPS_1037) - 1032918..1034189 (-) 1272 WP_015939585.1 AmpG family muropeptide MFS transporter -
  HAPS_RS05040 (HAPS_1038) galE 1034192..1035208 (-) 1017 WP_015939586.1 UDP-glucose 4-epimerase GalE -
  HAPS_RS05045 (HAPS_1039) - 1035273..1035935 (-) 663 WP_005712071.1 pseudouridine synthase -
  HAPS_RS05050 (HAPS_1040) - 1036098..1036427 (+) 330 WP_015939587.1 YbaB/EbfC family nucleoid-associated protein -
  HAPS_RS05055 (HAPS_1041) recR 1036494..1037099 (+) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  HAPS_RS05060 (HAPS_1042) pyrG 1037210..1038844 (+) 1635 WP_015939589.1 glutamine hydrolyzing CTP synthase -
  HAPS_RS05065 (HAPS_1043) serA 1038956..1040188 (-) 1233 WP_015939590.1 phosphoglycerate dehydrogenase -
  HAPS_RS05070 (HAPS_1044) rpiA 1040251..1040910 (-) 660 WP_015939591.1 ribose-5-phosphate isomerase RpiA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=29392 HAPS_RS05055 WP_015939588.1 1036494..1037099(+) (recR) [Glaesserella parasuis SH0165]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=29392 HAPS_RS05055 WP_015939588.1 1036494..1037099(+) (recR) [Glaesserella parasuis SH0165]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCTGGAGTCGGCCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTCGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGGCCTCGTGAAATTGGTTTAGATTTATTACAGAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCGACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATTGCACACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTAGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403

Multiple sequence alignment