Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   EQJ69_RS06325 Genome accession   NZ_CP035188
Coordinates   1236146..1239538 (+) Length   1130 a.a.
NCBI ID   WP_128472348.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103914     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231146..1244538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ69_RS06315 (EQJ69_06315) addA 1231211..1234903 (+) 3693 WP_009328898.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  EQJ69_RS06320 (EQJ69_06320) sbcD 1234968..1236149 (+) 1182 WP_009328897.1 exonuclease subunit SbcD -
  EQJ69_RS06325 (EQJ69_06325) sbcC 1236146..1239538 (+) 3393 WP_128472348.1 exonuclease subunit SbcC Machinery gene
  EQJ69_RS06330 (EQJ69_06330) - 1239583..1239801 (-) 219 WP_016885923.1 spore germination protein -
  EQJ69_RS06335 (EQJ69_06335) - 1239857..1240240 (-) 384 WP_003180437.1 spore germination protein GerPE -
  EQJ69_RS06340 (EQJ69_06340) - 1240237..1240419 (-) 183 WP_003180439.1 hypothetical protein -
  EQJ69_RS06345 (EQJ69_06345) - 1240416..1241030 (-) 615 WP_026579927.1 spore germination protein GerPC -
  EQJ69_RS06350 (EQJ69_06350) - 1241049..1241294 (-) 246 WP_020450873.1 spore germination protein GerPB -
  EQJ69_RS06355 (EQJ69_06355) - 1241307..1241528 (-) 222 WP_020450874.1 spore germination protein -
  EQJ69_RS06360 (EQJ69_06360) - 1241714..1242007 (+) 294 WP_020450875.1 DUF3784 domain-containing protein -
  EQJ69_RS06365 (EQJ69_06365) - 1242090..1242272 (-) 183 WP_020450876.1 aspartyl-phosphate phosphatase Spo0E family protein -
  EQJ69_RS06370 (EQJ69_06370) - 1242435..1243511 (-) 1077 WP_128472349.1 CotH kinase family protein -
  EQJ69_RS06375 (EQJ69_06375) - 1243677..1244342 (+) 666 WP_241656996.1 hypothetical protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 129000.74 Da        Isoelectric Point: 5.4698

>NTDB_id=293901 EQJ69_RS06325 WP_128472348.1 1236146..1239538(+) (sbcC) [Bacillus licheniformis strain SRCM103914]
MKPISLSIKGLHSFRQEQVIDFERLCDAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDELAVSFTF
KLQTGHETAYKVERVFKRTDAVKVKTSICRFIEMKEEQIVLADKANEVNRKIEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRQMLQRLFNLEQYGDRLVKKLKKQAQTAQSRKNEMLAEQAGLGDAGEEALKLAEQHLEEAETLLQSKRRERDAEA
QRFAEYQEIWNLQQEKESYLKKEAELLKKKEQIREKESRLHLAETANTLKPYADAFLAAREDAERALREEKQAREQLEQY
EELHKKTECEYENFRRHKNEKEPELLKQEEQLTALKEIENKRLAAQAEAEKKQREQRLKEEEIKHAADELAKVKSLLERG
TAKQNQLKAELKSVQVSSEERKNCRNANQLAFHIQQLNNDAALEKERLGQQETLIKELQQEQQAVDQKVKAETERIEALF
AAVERAYALVCETDRSLSETIRVASQKKEEIAAKREQANRDQLAIELAKQLKDGEPCPVCGSVHHEMPARVGIESLSFKE
ADSELEKTEAIIAEAGALAQEFLSAKVALEQQSDHLVSECPFLVKSKHELPETAASIEEGTIPERYNRISFEWKGIRQDL
AETKSRMSKLLHTYKELCKKRDQISERLSHEEKERNRLQNRVGELNDQLNERRKSFGEQFDGLSYEQAEKWQKTIEEKDL
AAEEFEKRIETSVGFLTKHEQQKEKLTERLFALDKEKLDLRYAVESLNKEINDYQKELMGYPDTAAIDKKLQDVKTQLAK
LHEQEQTLYGRLKETESEVSRLRGQTKGCELALREAEARLAKAADIWQEKSGGTPFEKASEVKASILDRDDLARLKEDIQ
MHWDQTKQCESNIKRITEKLDGRSVSEESWEKAAVTKDKAEEAFSKALEERGAAGKALAVIRENHKRFKELEASLAEWQT
YIDRLDKLQAVFKGNSFVEYLAEEQLESVTRDASARLGELTRQRYAIEVDSEGGFVMRDDANGGVKRPVTSLSGGETFLT
SLALALALSAQIQLRGEYPLQFFFLDEGFGTLDQDLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPAEPSG
KGTAVSLEMI

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=293901 EQJ69_RS06325 WP_128472348.1 1236146..1239538(+) (sbcC) [Bacillus licheniformis strain SRCM103914]
ATGAAGCCGATTTCTCTGTCTATTAAGGGCCTGCACAGTTTCAGGCAGGAGCAGGTAATCGATTTTGAGCGCCTGTGCGA
TGCCGGTGTATTCGGCATCTTCGGGCCGACCGGAAGCGGCAAGTCGTCGATTCTTGATGCGATGACTCTTGCTTTGTACG
GGAAAGTGGAGCGGGCCGCCAATAATACGCACGGCATTTTGAACCATGCCGAAGATGAGCTTGCCGTATCGTTTACGTTT
AAGCTGCAGACAGGCCATGAGACGGCTTATAAAGTGGAACGGGTCTTTAAGCGGACAGACGCCGTCAAGGTCAAAACGTC
GATATGCCGCTTTATTGAAATGAAAGAGGAACAAATCGTCCTGGCCGATAAAGCGAATGAAGTAAACCGAAAAATCGAAG
AGCTGCTGGGCTTGACGATCGACGATTTTACAAGGGCAGTCGTCCTGCCGCAAGGAAAATTCGCCGAATTTCTTTCCTTG
AAAGGAGCGGAGCGAAGGCAGATGCTTCAGCGCCTGTTCAACCTTGAACAATACGGGGACAGGCTCGTCAAAAAACTAAA
GAAACAGGCGCAAACAGCTCAGTCCAGAAAAAACGAGATGCTTGCCGAGCAGGCTGGATTGGGCGATGCGGGGGAAGAGG
CGCTGAAGCTGGCGGAACAGCATCTCGAAGAAGCCGAAACCCTTTTGCAAAGCAAGAGGCGCGAACGAGATGCGGAAGCG
CAGCGCTTTGCGGAGTACCAGGAAATTTGGAATCTGCAGCAAGAAAAAGAAAGCTATCTAAAAAAAGAGGCGGAGCTTTT
AAAGAAAAAGGAACAGATCCGGGAAAAAGAAAGCCGCCTGCATCTCGCTGAAACGGCAAATACGCTCAAGCCTTATGCAG
ACGCCTTTCTGGCAGCGCGGGAAGATGCCGAGCGCGCACTTCGGGAAGAAAAACAAGCGCGGGAACAATTAGAACAATAC
GAAGAGCTTCATAAAAAAACAGAGTGCGAGTACGAGAATTTCAGGCGTCATAAAAATGAAAAAGAACCGGAGCTTCTCAA
GCAAGAAGAACAGCTCACCGCTTTGAAGGAAATTGAAAACAAGCGGCTTGCCGCACAGGCAGAAGCTGAGAAAAAGCAGC
GGGAACAGCGTTTGAAAGAAGAGGAAATCAAGCATGCGGCAGACGAGCTGGCCAAGGTGAAAAGTCTGCTTGAACGCGGG
ACAGCCAAGCAGAATCAGCTGAAAGCGGAGCTGAAATCTGTCCAGGTATCTAGCGAAGAGCGTAAAAACTGCCGAAATGC
CAATCAGCTTGCTTTTCACATTCAACAGCTTAACAACGATGCCGCTTTAGAAAAGGAACGGCTTGGTCAGCAGGAGACGC
TGATTAAAGAGCTCCAGCAAGAACAGCAAGCGGTGGATCAAAAGGTAAAAGCTGAAACCGAACGCATCGAGGCATTGTTT
GCCGCTGTCGAACGAGCGTACGCGCTCGTTTGCGAAACAGACAGATCGCTCTCTGAGACCATCCGTGTGGCATCTCAAAA
AAAAGAAGAGATTGCGGCAAAACGGGAACAGGCAAACCGTGATCAGCTGGCAATCGAACTGGCAAAGCAGCTCAAAGACG
GAGAGCCTTGTCCGGTCTGCGGATCTGTACATCATGAAATGCCCGCCCGCGTCGGCATAGAAAGCCTGTCCTTTAAAGAG
GCGGATTCCGAACTGGAGAAAACGGAAGCCATCATCGCTGAAGCCGGTGCGCTGGCTCAGGAGTTTCTCTCGGCCAAAGT
GGCACTCGAACAGCAATCCGACCACCTGGTGAGCGAATGCCCGTTTTTAGTCAAGAGCAAACATGAACTGCCTGAAACCG
CTGCATCGATAGAAGAAGGCACCATTCCCGAACGGTACAACCGCATCAGCTTTGAATGGAAAGGAATCAGACAGGATCTC
GCAGAGACAAAAAGCAGGATGTCCAAGCTCCTTCACACATATAAAGAGCTCTGCAAGAAACGCGACCAAATCAGCGAGCG
ACTCAGCCATGAAGAAAAGGAGCGTAACAGGCTTCAAAACCGCGTCGGCGAATTAAATGACCAGTTAAATGAACGCCGAA
AAAGCTTCGGCGAACAATTCGACGGCCTCTCTTATGAACAGGCTGAAAAATGGCAAAAAACGATTGAAGAAAAAGATCTG
GCCGCAGAGGAATTCGAAAAGCGTATCGAAACGAGCGTCGGCTTTCTCACAAAACATGAACAGCAAAAAGAGAAGCTCAC
CGAGCGCTTGTTTGCGCTTGATAAAGAAAAGCTCGACCTCCGCTATGCTGTCGAAAGCCTTAATAAAGAAATAAACGATT
ATCAAAAAGAGCTGATGGGCTATCCCGATACAGCTGCAATCGACAAAAAGCTTCAAGACGTGAAAACGCAATTGGCCAAG
CTGCATGAGCAGGAACAGACGCTTTACGGACGGCTCAAAGAGACCGAATCCGAAGTCAGCCGTTTAAGAGGACAGACAAA
AGGGTGTGAGCTCGCTTTGCGTGAAGCGGAAGCAAGGCTTGCGAAAGCGGCGGACATCTGGCAGGAAAAATCCGGAGGTA
CACCGTTTGAAAAGGCCTCTGAAGTGAAAGCGAGCATTTTAGACCGCGATGATCTTGCCCGGCTGAAAGAAGACATTCAA
ATGCATTGGGATCAGACAAAACAGTGCGAGTCCAATATCAAGCGGATTACGGAAAAGCTTGATGGGAGATCGGTTTCTGA
GGAGAGTTGGGAAAAAGCCGCCGTCACGAAGGACAAAGCTGAGGAGGCATTCAGCAAAGCCTTGGAAGAAAGGGGCGCGG
CCGGCAAAGCTCTCGCCGTCATCCGCGAGAACCATAAAAGGTTTAAGGAACTTGAAGCATCATTGGCTGAATGGCAGACA
TACATCGACCGTCTTGATAAACTCCAAGCCGTCTTTAAAGGAAACAGCTTTGTTGAATACTTGGCAGAAGAGCAGCTTGA
AAGCGTCACAAGAGACGCATCTGCAAGACTCGGCGAACTGACAAGACAGAGGTATGCGATTGAAGTCGACTCAGAAGGCG
GTTTTGTGATGAGGGACGATGCCAACGGCGGAGTCAAGCGCCCTGTTACGAGTCTGTCAGGTGGGGAGACGTTTCTGACT
TCACTGGCGCTTGCGCTTGCACTTTCGGCACAGATCCAGCTTCGCGGAGAGTATCCGCTCCAATTCTTCTTTTTGGACGA
AGGGTTTGGCACGCTTGATCAGGATTTGCTGGATACGGTCGTGACCGCATTGGAGAAGCTTCAGTCTGACAATCTGTCGG
TCGGTGTGATCAGCCACGTTCAGGAACTTCGGGCCAGGCTGCCGAAGAAGCTGATTGTCCATCCGGCTGAACCGAGCGGC
AAAGGCACAGCTGTATCGCTTGAAATGATTTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(5-280)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1002-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

56.526

100

0.567