Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EQJ69_RS04460 Genome accession   NZ_CP035188
Coordinates   873844..874560 (+) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain SRCM103914     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 868844..879560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ69_RS04445 (EQJ69_04445) - 869046..870458 (+) 1413 WP_009329067.1 sodium:alanine symporter family protein -
  EQJ69_RS04450 (EQJ69_04450) treP 870648..872060 (+) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  EQJ69_RS04455 (EQJ69_04455) treC 872134..873822 (+) 1689 WP_003179746.1 alpha,alpha-phosphotrehalase -
  EQJ69_RS04460 (EQJ69_04460) treR 873844..874560 (+) 717 WP_009329065.1 trehalose operon repressor Regulator
  EQJ69_RS04465 (EQJ69_04465) - 874667..875359 (+) 693 WP_003179750.1 N-acetyltransferase -
  EQJ69_RS04470 (EQJ69_04470) - 875486..876604 (+) 1119 WP_128472341.1 NTTRR-F1 domain -
  EQJ69_RS04475 (EQJ69_04475) - 876824..879205 (+) 2382 WP_128472342.1 NTTRR-F1 domain -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=293885 EQJ69_RS04460 WP_009329065.1 873844..874560(+) (treR) [Bacillus licheniformis strain SRCM103914]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=293885 EQJ69_RS04460 WP_009329065.1 873844..874560(+) (treR) [Bacillus licheniformis strain SRCM103914]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412