Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DKY66_RS04050 Genome accession   NZ_CP029561
Coordinates   713652..714461 (+) Length   269 a.a.
NCBI ID   WP_001289498.1    Uniprot ID   X5KFV3
Organism   Streptococcus agalactiae strain 32790-3A     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 708652..719461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY66_RS04025 (DKY66_04020) - 708981..709676 (-) 696 WP_000173638.1 amino acid ABC transporter permease -
  DKY66_RS04030 (DKY66_04025) - 709689..710489 (-) 801 WP_000946173.1 transporter substrate-binding domain-containing protein -
  DKY66_RS04035 (DKY66_04030) - 710501..711256 (-) 756 WP_071661600.1 amino acid ABC transporter ATP-binding protein -
  DKY66_RS04040 (DKY66_04035) vicR 711596..712306 (+) 711 WP_000722052.1 response regulator YycF Regulator
  DKY66_RS04045 (DKY66_04040) vicK 712299..713648 (+) 1350 WP_001065465.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DKY66_RS04050 (DKY66_04045) vicX 713652..714461 (+) 810 WP_001289498.1 MBL fold metallo-hydrolase Regulator
  DKY66_RS04055 (DKY66_04050) - 714464..714832 (+) 369 WP_000719384.1 YbaN family protein -
  DKY66_RS04060 (DKY66_04055) rnc 715007..715693 (+) 687 WP_000661526.1 ribonuclease III -
  DKY66_RS04065 (DKY66_04060) smc 715701..719240 (+) 3540 WP_000478786.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30273.24 Da        Isoelectric Point: 6.2265

>NTDB_id=293628 DKY66_RS04050 WP_001289498.1 713652..714461(+) (vicX) [Streptococcus agalactiae strain 32790-3A]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=293628 DKY66_RS04050 WP_001289498.1 713652..714461(+) (vicX) [Streptococcus agalactiae strain 32790-3A]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5KFV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment