Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   DLJ52_RS09775 Genome accession   NZ_CP029559
Coordinates   2005052..2007502 (-) Length   816 a.a.
NCBI ID   WP_019768851.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2000052..2012502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS09750 (DLJ52_09750) hslO 2000622..2001494 (+) 873 WP_028798562.1 Hsp33 family molecular chaperone HslO -
  DLJ52_RS09755 (DLJ52_09755) dusB 2001481..2002461 (+) 981 WP_002960762.1 tRNA dihydrouridine synthase DusB -
  DLJ52_RS09760 (DLJ52_09760) - 2002497..2003396 (+) 900 WP_301950682.1 C4-dicarboxylate ABC transporter -
  DLJ52_RS09765 (DLJ52_09765) - 2003409..2004365 (+) 957 WP_109982780.1 YdcF family protein -
  DLJ52_RS09770 (DLJ52_09770) - 2004473..2004679 (-) 207 WP_019768852.1 hypothetical protein -
  DLJ52_RS09775 (DLJ52_09775) clpC 2005052..2007502 (-) 2451 WP_019768851.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  DLJ52_RS09780 (DLJ52_09780) - 2007495..2007962 (-) 468 WP_002963295.1 CtsR family transcriptional regulator -
  DLJ52_RS09785 (DLJ52_09785) tsf 2008307..2009347 (-) 1041 WP_019768850.1 translation elongation factor Ts -
  DLJ52_RS09790 (DLJ52_09790) rpsB 2009478..2010251 (-) 774 WP_002959771.1 30S ribosomal protein S2 -
  DLJ52_RS09795 (DLJ52_09795) - 2010445..2012292 (-) 1848 WP_019775168.1 APC family permease -

Sequence

Protein


Download         Length: 816 a.a.        Molecular weight: 90936.22 Da        Isoelectric Point: 6.1070

>NTDB_id=293546 DLJ52_RS09775 WP_019768851.1 2005052..2007502(-) (clpC) [Streptococcus sobrinus strain NIDR 6715-15]
MTDYSLKMQEIFSRAQYQAARYQSQFLETWHLLLAMVDTDETVAHLALLDFADQIDLDEYEDATMLVIRRKPIKVAQLNQ
VLPTSRALERILAYATRIAGAVKAPQVGSEHVLLSMMFGRDNLAARILEQVGFHFQDEGKDNLRLIDLRKVIERYAGFSK
EDVKAIFDLAKPKKSGNNNFSNMMGGPQPTTGDLADFTRDLTALAAQGQLEKVVGRDEEIMRMLQILSRKTKNNPVLVGD
AGVGKTALAYGLAQRIVEGEVPYELANFRVLELDMMSVVAGTRFRGDFEERMNQIIADIEADGHIILFVDEVHTIMGSGS
GIDSTLDAANILKPALSRGTLHMIGATTQEEYSKHIEKDAALSRRFARVLIEEPTVDEAYQILLGLRGSYESYHNVTISD
QAVLTAVKSAHRYLTSKNLPDSAIDLLDEASAMVQNTVKRSLPTFLSSADQALLSGNLEAVAGLLKTEEDKQKIHKPVAV
REEDILRTLSKLSGIPLEKMTQADNQRYLNLEKELHKRVIGQEDAVSAVSRAIRRNQSGIRTGKRPIGSFMFLGPTGVGK
TELAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRQKPYSVLLFDEVEKAHPDIFNVLL
QVLDDGVLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKGIRQDYQAMQGRIMEELRKAYRPEFINRIDEKIVF
HSLTPDHMRQVVKLMLKPLAATLTEKQIDLKVQPAALKLLAEHGYDPEMGARPLRRTIQTEVEDRLSELLLSGQLKADSK
LKIGSHKGSLKFTIDD

Nucleotide


Download         Length: 2451 bp        

>NTDB_id=293546 DLJ52_RS09775 WP_019768851.1 2005052..2007502(-) (clpC) [Streptococcus sobrinus strain NIDR 6715-15]
ATGACTGATTATTCCCTGAAAATGCAAGAAATATTTAGCCGGGCCCAGTACCAGGCTGCCCGTTACCAAAGTCAATTTTT
GGAGACCTGGCATCTTCTTCTAGCCATGGTGGATACCGATGAGACGGTAGCTCATTTGGCTCTGCTGGATTTTGCGGATC
AAATTGATTTGGATGAATACGAGGATGCAACCATGCTGGTCATCCGTCGTAAGCCAATCAAGGTTGCTCAGCTTAATCAA
GTTTTACCGACATCAAGAGCCTTGGAGCGTATTCTGGCCTATGCCACTCGCATCGCTGGAGCTGTAAAAGCACCTCAAGT
TGGTAGTGAGCACGTTCTTTTGTCCATGATGTTTGGGCGTGACAATCTAGCCGCTAGGATTTTGGAGCAGGTCGGTTTTC
ATTTTCAAGATGAGGGCAAGGATAATCTTCGATTGATTGACCTGCGCAAGGTTATCGAGCGCTACGCAGGCTTTTCTAAG
GAAGATGTCAAGGCTATTTTTGACTTGGCCAAGCCCAAGAAATCTGGCAATAACAACTTTAGCAATATGATGGGCGGACC
TCAGCCAACAACGGGTGATTTAGCCGATTTCACCCGTGATTTGACAGCTCTAGCTGCTCAAGGTCAGCTGGAAAAGGTTG
TCGGCCGTGATGAGGAAATCATGCGGATGTTGCAAATTCTCAGCCGTAAGACCAAGAATAATCCTGTCTTGGTCGGTGAT
GCCGGTGTCGGAAAGACAGCCCTGGCTTACGGTCTGGCCCAGAGAATTGTCGAGGGAGAGGTCCCATATGAATTAGCCAA
CTTCCGAGTTTTGGAATTGGACATGATGTCAGTTGTGGCTGGTACCCGCTTTCGAGGTGACTTTGAAGAGCGCATGAATC
AGATTATTGCGGATATTGAGGCCGATGGTCATATCATCCTCTTTGTTGATGAGGTTCACACTATTATGGGCTCTGGTAGC
GGTATTGATAGCACCCTAGATGCTGCTAATATTCTTAAGCCGGCTCTTTCTAGAGGAACCCTCCACATGATTGGGGCAAC
GACCCAAGAAGAGTATTCTAAGCATATTGAAAAGGATGCCGCTCTATCTCGTCGCTTTGCTAGGGTTTTGATTGAAGAGC
CAACGGTTGATGAGGCCTATCAGATTCTATTAGGATTGAGGGGTAGCTATGAAAGTTACCATAATGTTACCATCTCTGAC
CAGGCTGTCTTAACGGCTGTCAAATCGGCCCATCGCTATTTGACCAGCAAGAACCTGCCCGATTCAGCTATTGATCTGCT
GGATGAAGCCAGTGCTATGGTACAAAATACGGTGAAACGTTCCTTGCCGACCTTTCTCAGTTCGGCTGACCAAGCCCTCC
TCTCTGGAAATCTGGAAGCCGTCGCTGGCCTCCTTAAGACGGAAGAAGATAAGCAGAAGATTCACAAGCCTGTCGCCGTC
AGGGAAGAGGACATCCTGCGGACCCTCAGCAAACTCTCAGGTATTCCGCTTGAGAAGATGACCCAGGCTGATAATCAGCG
TTACCTCAATTTGGAAAAGGAACTCCACAAGCGGGTTATCGGTCAAGAGGATGCTGTCTCAGCTGTTTCCAGAGCCATTC
GCCGTAACCAGTCGGGTATCCGGACCGGCAAGCGGCCAATCGGTTCCTTCATGTTCCTAGGGCCAACTGGGGTTGGTAAA
ACCGAGTTGGCCAAGGCCCTAGCTGAGCTCCTCTTTGATGATGAGTCAGCTCTGATTCGCTTTGATATGTCCGAGTACAT
GGAAAAATTTGCTGCCAGCCGGCTCAACGGAGCTCCTCCAGGCTATGTTGGTTACGAAGAAGGAGGCGAATTGACCGAGA
AGGTGCGCCAGAAGCCTTATTCTGTCCTCCTCTTTGATGAGGTAGAAAAGGCTCACCCTGACATCTTCAATGTCCTCCTC
CAGGTGCTGGATGATGGGGTATTGACCGACAGTCGTGGGCGCAAAGTTGATTTCTCTAATACCATCATTATCATGACCAG
CAATTTGGGGGCGACGGCTCTTCGAGATGATAAAACCGTTGGCTTTGGTGCCAAGGGCATCAGGCAGGATTACCAAGCTA
TGCAAGGACGAATTATGGAAGAACTCAGAAAAGCCTACCGGCCTGAATTCATCAATCGGATTGATGAGAAGATTGTCTTC
CACAGTTTAACACCAGACCACATGCGTCAAGTTGTTAAGTTGATGCTGAAACCACTGGCAGCTACCCTGACTGAGAAGCA
AATCGACCTTAAAGTTCAGCCAGCTGCTCTCAAACTCTTGGCTGAGCATGGTTATGATCCAGAAATGGGAGCTCGGCCTT
TACGCCGAACCATTCAAACTGAAGTTGAAGACAGATTGTCCGAATTGCTCCTGTCAGGCCAATTAAAGGCCGATTCCAAA
CTAAAAATTGGCAGCCACAAGGGCAGTCTGAAATTTACCATTGATGACTAG

Domains

Predicted by InterproScan.

Clp amino terminal domain, pathogenicity island component (Clp_N)

(18-44)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(105-133)

ATPase family associated with various cellular activities (AAA) (AAA)

(236-369)

AAA lid domain (AAA_lid_9)

(375-440)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(723-802)

AAA domain (Cdc48 subfamily) (AAA_2)

(545-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

71.288

99.877

0.712
  clpC Streptococcus thermophilus LMG 18311

69.645

100

0.697
  clpC Streptococcus thermophilus LMD-9

69.645

100

0.697
  clpC Streptococcus pneumoniae TIGR4

65.602

99.755

0.654
  clpC Streptococcus pneumoniae Rx1

65.479

99.755

0.653
  clpC Streptococcus pneumoniae D39

65.479

99.755

0.653
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

49.106

100

0.505
  clpC Bacillus subtilis subsp. subtilis str. 168

45.41

100

0.455
  clpE Streptococcus pneumoniae Rx1

46.083

79.779

0.368
  clpE Streptococcus pneumoniae D39

46.083

79.779

0.368
  clpE Streptococcus pneumoniae R6

46.083

79.779

0.368
  clpE Streptococcus pneumoniae TIGR4

46

79.657

0.366
  clpE Streptococcus mutans UA159

46.9

77.083

0.362

Multiple sequence alignment