Detailed information NTG0293544

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: DLJ52_RS09605
• Genome accession: NZ_CP029559
• Coordinates: 1974529..1975893 (-)
• Length: 454 a.a.
• NCBI ID: WP_029236682.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain NIDR 6715-15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1969529..1980893

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLJ52_RS09585 (DLJ52_09585)	-	1970274..1971030 (-)	757	Protein_1817	lysostaphin resistance A-like protein	-
DLJ52_RS09590 (DLJ52_09590)	-	1971291..1972151 (-)	861	WP_004205757.1	DegV family protein	-
DLJ52_RS09595 (DLJ52_09595)	-	1972365..1972877 (-)	513	WP_019789278.1	NYN domain-containing protein	-
DLJ52_RS09600 (DLJ52_09600)	rlmB	1973795..1974532 (-)	738	WP_019771549.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
DLJ52_RS09605 (DLJ52_09605)	radA	1974529..1975893 (-)	1365	WP_029236682.1	DNA repair protein RadA	Machinery gene
DLJ52_RS09610 (DLJ52_09610)	-	1975977..1976441 (-)	465	WP_019776493.1	isochorismatase family protein	-
DLJ52_RS09615 (DLJ52_09615)	-	1976450..1976896 (-)	447	WP_109982775.1	dUTP diphosphatase	-
DLJ52_RS09620 (DLJ52_09620)	-	1977215..1978243 (+)	1029	WP_109982776.1	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	-
DLJ52_RS09625 (DLJ52_09625)	galU	1978282..1979184 (+)	903	WP_019769015.1	UTP--glucose-1-phosphate uridylyltransferase GalU	-
DLJ52_RS09630 (DLJ52_09630)	-	1979474..1979902 (+)	429	WP_002961690.1	hypothetical protein	-
DLJ52_RS09635 (DLJ52_09635)	-	1980009..1980611 (-)	603	WP_002961692.1	AAA family ATPase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49651.00 Da
• Isoelectric Point: 6.6527

>NTDB_id=293544 DLJ52_RS09605 WP_029236682.1 1974529..1975893(-) (radA) [Streptococcus sobrinus strain NIDR 6715-15]
MAKKKSTFVCQECGYNSPKYLGRCPNCGSWSSFVEEKEVEEVKNARVSLTGEKTKPTKLKDVSSIDYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYIYAETNMQNIRTEIE
RLQPDFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVLNPSQLFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLTGEIR
RVNRIEQRLNEATKLGFTKVYAPKNALHGIVIPKNIQVIGVSTVGEVLKKVFKS

Nucleotide

• Length: 1365 bp

>NTDB_id=293544 DLJ52_RS09605 WP_029236682.1 1974529..1975893(-) (radA) [Streptococcus sobrinus strain NIDR 6715-15]
ATCGCTAAGAAAAAATCAACCTTTGTCTGTCAGGAATGTGGCTACAATTCGCCCAAGTATCTGGGCCGTTGTCCCAACTG
TGGTTCCTGGTCCTCCTTTGTCGAAGAAAAGGAAGTCGAAGAGGTCAAGAATGCCAGGGTTTCCTTGACCGGCGAAAAGA
CCAAGCCAACCAAGTTGAAAGATGTTTCCTCCATTGATTATGCTAGGACCAAGACGGATATGGATGAGTTCAACCGTGTC
TTGGGGGGTGGTGTAGTGCCAGGCAGTCTGGTTCTCATCGGTGGCGACCCCGGTATTGGGAAATCAACCTTACTCTTGCA
AGTCTCGACCCAGCTGGCTAATAAGGGAACGGTTCTCTATGTTTCAGGGGAAGAATCCGCCGAGCAAATCAAGCTCCGCA
GCGAGAGACTGGGCGATATTGATAATGAATTTTACATCTACGCCGAGACCAATATGCAAAATATCCGCACGGAAATTGAG
CGGCTGCAACCAGATTTTCTGATTATTGACTCCATCCAGACAGTCATGAGTCCCGAGATTACTAGTGTACAGGGCTCGGT
CTCCCAGGTGCGGGAGGTAACGGCTGAGCTCATGCAGCTGGCCAAGAGTAATAATATTGCTACCTTCATTGTTGGCCATG
TGACCAAGGAAGGAACTCTGGCTGGTCCTAGAATGCTGGAGCACATGGTGGATACGGTCCTTTATTTTGAAGGCGAACGC
CACCACACCTTTCGGATTTTGCGAGCAGTCAAAAATCGTTTCGGTTCAACCAACGAAATCGGTATTTTTGAGATGCAGAC
GGGCGGTCTGGTTGAGGTCCTCAATCCCAGCCAGCTCTTTTTAGAGGAACGTCTGGACGGGGCAACGGGTTCGGCTATTG
TTGTCACCATGGAAGGAACCCGGCCCATCTTAGCCGAGGTGCAAGCCTTAGTCACACCGACTGTTTTTGGTAATGCCAAG
CGAACCACGACAGGATTGGATTTCAATCGGGTTAGCCTGATTATGGCCGTATTGGAGAAACGCTGTGGACTCCTTCTGCA
AAATCAGGATGCCTACCTCAAGTCGGCTGGTGGGGTCAAATTGGACGAGCCTGCCATCGACCTAGCTGTGGCAGTCGCCA
TCGCTTCCTCCTACAAGGAAGCACCGACCAATGCCCAAGATGCTTTCATCGGGGAAATCGGTCTGACTGGTGAAATTCGT
CGGGTCAACCGTATTGAGCAACGCCTCAATGAAGCTACCAAACTGGGCTTTACCAAGGTTTACGCTCCTAAAAATGCCTT
GCATGGCATTGTAATTCCTAAAAACATCCAAGTCATTGGCGTTTCAACCGTCGGGGAAGTATTAAAGAAAGTATTTAAGT
CATGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-218)

• Subunit ChlI of Mg-chelatase (ChlI) (360-425)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	88.053	99.559	0.877
radA	Streptococcus pneumoniae D39	87.832	99.559	0.874
radA	Streptococcus pneumoniae R6	87.832	99.559	0.874
radA	Streptococcus pneumoniae Rx1	87.832	99.559	0.874
radA	Streptococcus pneumoniae TIGR4	87.832	99.559	0.874
radA	Streptococcus mitis SK321	87.611	99.559	0.872
radA	Bacillus subtilis subsp. subtilis str. 168	62.693	99.78	0.626