Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   EQJ08_RS18745 Genome accession   NZ_CP035167
Coordinates   3632787..3633920 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain SRCM104008     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627787..3638920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS18705 (EQJ08_18705) ywnA 3627951..3628352 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  EQJ08_RS18710 (EQJ08_18710) ureC 3628487..3630196 (-) 1710 WP_128441903.1 urease subunit alpha -
  EQJ08_RS18715 (EQJ08_18715) ureB 3630193..3630567 (-) 375 WP_003227726.1 urease subunit beta -
  EQJ08_RS18720 (EQJ08_18720) ureA 3630564..3630881 (-) 318 WP_003227724.1 urease subunit gamma -
  EQJ08_RS18725 (EQJ08_18725) - 3631073..3631233 (-) 161 Protein_3618 hypothetical protein -
  EQJ08_RS21360 - 3631456..3631680 (-) 225 Protein_3619 urea ABC transporter substrate-binding protein -
  EQJ08_RS18735 (EQJ08_18735) csbD 3631892..3632080 (-) 189 WP_015251021.1 stress response protein CsbD -
  EQJ08_RS18740 (EQJ08_18740) - 3632153..3632632 (-) 480 WP_003244390.1 hypothetical protein -
  EQJ08_RS18745 (EQJ08_18745) rapC 3632787..3633920 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  EQJ08_RS18750 (EQJ08_18750) moaA 3634112..3635137 (-) 1026 WP_128441907.1 GTP 3',8-cyclase MoaA -
  EQJ08_RS18755 (EQJ08_18755) fdhD 3635153..3635941 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  EQJ08_RS18760 (EQJ08_18760) - 3636187..3636348 (-) 162 WP_003227706.1 hypothetical protein -
  EQJ08_RS18765 (EQJ08_18765) ywmD 3636443..3637117 (-) 675 WP_003243553.1 VWA domain-containing protein -
  EQJ08_RS18770 (EQJ08_18770) - 3637170..3637310 (-) 141 WP_014478246.1 hypothetical protein -
  EQJ08_RS18775 (EQJ08_18775) ywmC 3637441..3638124 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=293532 EQJ08_RS18745 WP_003227715.1 3632787..3633920(-) (rapC) [Bacillus subtilis strain SRCM104008]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=293532 EQJ08_RS18745 WP_003227715.1 3632787..3633920(-) (rapC) [Bacillus subtilis strain SRCM104008]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTATATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTAGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment