Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   DLJ52_RS03225 Genome accession   NZ_CP029559
Coordinates   629190..630278 (+) Length   362 a.a.
NCBI ID   WP_019769373.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 624190..635278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS03200 (DLJ52_03200) asnA 625182..626174 (+) 993 WP_019771423.1 aspartate--ammonia ligase -
  DLJ52_RS03210 (DLJ52_03210) - 626929..628008 (+) 1080 WP_109982487.1 MmcQ/YjbR family DNA-binding protein -
  DLJ52_RS03215 (DLJ52_03215) rsmD 628183..628722 (+) 540 WP_109982488.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  DLJ52_RS03220 (DLJ52_03220) coaD 628712..629203 (+) 492 WP_002962602.1 pantetheine-phosphate adenylyltransferase -
  DLJ52_RS03225 (DLJ52_03225) sepM 629190..630278 (+) 1089 WP_019769373.1 SepM family pheromone-processing serine protease Regulator
  DLJ52_RS03230 (DLJ52_03230) - 630480..631115 (+) 636 WP_109982489.1 YutD-like domain-containing protein -
  DLJ52_RS03235 (DLJ52_03235) rlmN 631117..632247 (+) 1131 WP_109982490.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  DLJ52_RS03240 (DLJ52_03240) - 632240..632770 (+) 531 WP_109982491.1 VanZ family protein -
  DLJ52_RS03245 (DLJ52_03245) - 633024..634766 (+) 1743 WP_019770411.1 ABC transporter transmembrane domain-containing protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39331.07 Da        Isoelectric Point: 9.9836

>NTDB_id=293517 DLJ52_RS03225 WP_019769373.1 629190..630278(+) (sepM) [Streptococcus sobrinus strain NIDR 6715-15]
MTTSKSSQAASKKGVWGFIKRIKWWLLGGFALLALLFCFLVPLPYYVEAPGGAYDIDQVMTVNGKTNKDKGSYNFVAVEV
RPGTVFNLAYSWLNPDTTQIVSKKELTGGTSTKDYELINQYYMENSQNTAIYQALKLAGKDAKLDYKGVYVLQVADNSSF
KGTLNIADTVTGINGKSFKSSKDLVKYVTGLKLDSQVTVQYTNQGKKKSADGKVVKLKNGKNGIGITLTDHTEVSSNDKV
KFSTQGVGGPSAGLMFTLSIYDQLNKDDLLKGRMIAGTGTIEPDGSVGDIGGVSQKVVSADKSGAEIFFVPDNPVAKADK
KYYPKGNNYQEAKKMAKKLGSKMKIVPVKTAQDAIDYLEKTK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=293517 DLJ52_RS03225 WP_019769373.1 629190..630278(+) (sepM) [Streptococcus sobrinus strain NIDR 6715-15]
ATGACAACAAGTAAGTCAAGCCAGGCCGCCTCTAAAAAGGGAGTTTGGGGCTTTATCAAACGGATTAAATGGTGGCTTCT
GGGAGGTTTTGCCCTTCTGGCTCTGCTCTTTTGCTTTCTCGTTCCTCTGCCCTATTATGTTGAGGCTCCTGGCGGCGCCT
ATGATATCGATCAGGTCATGACCGTAAATGGCAAGACTAATAAGGACAAGGGTTCCTACAATTTTGTGGCAGTCGAAGTT
CGCCCAGGAACAGTCTTTAATCTGGCCTATTCCTGGCTCAATCCTGATACCACCCAGATTGTTTCCAAAAAAGAACTAAC
CGGTGGCACCAGCACCAAGGACTATGAGCTGATTAATCAGTACTACATGGAAAATTCCCAAAATACGGCTATTTATCAGG
CCCTCAAGCTGGCTGGTAAGGATGCCAAGTTGGATTACAAGGGGGTCTATGTGCTCCAGGTCGCTGATAATTCAAGCTTC
AAGGGGACTCTCAATATTGCGGATACGGTGACGGGAATTAATGGCAAGAGCTTCAAGTCTTCCAAGGACCTGGTCAAATA
TGTCACAGGCCTCAAGTTGGACTCTCAGGTGACCGTCCAATACACCAACCAAGGTAAGAAGAAATCAGCTGATGGCAAGG
TGGTCAAGCTCAAGAATGGCAAGAATGGTATCGGCATTACTCTGACCGACCATACCGAAGTCAGCTCAAACGATAAGGTG
AAATTCTCCACCCAAGGCGTTGGCGGACCTAGTGCAGGTCTTATGTTTACCCTGTCCATCTACGACCAGCTCAACAAGGA
TGACCTCCTCAAGGGACGGATGATTGCCGGAACAGGAACCATAGAGCCGGATGGTTCGGTTGGTGACATCGGCGGAGTTT
CGCAGAAGGTCGTTTCCGCTGATAAGTCAGGTGCCGAAATTTTCTTTGTTCCTGACAATCCCGTTGCCAAGGCAGACAAG
AAGTACTACCCCAAGGGAAACAACTACCAAGAAGCCAAAAAAATGGCCAAGAAGCTGGGCAGCAAGATGAAAATCGTTCC
CGTCAAGACGGCTCAAGATGCTATCGACTACCTAGAAAAAACCAAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(248-314)

PDZ domain (PDZ_2)

(146-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

65.789

94.475

0.622

Multiple sequence alignment