Detailed information NTG0293473

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: DK843_RS15915
• Genome accession: NZ_CP029554
• Coordinates: 3329868..3330773 (-)
• Length: 301 a.a.
• NCBI ID: WP_114073772.1
• Uniprot ID: A0A344UK65
• Organism: Chromobacterium phragmitis strain IIBBL 274-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3324868..3335773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK843_RS15895 (DK843_15895)	-	3325397..3327181 (+)	1785	WP_114073770.1	PglL family O-oligosaccharyltransferase	-
DK843_RS15900 (DK843_15900)	rpoH	3327261..3328124 (-)	864	WP_114061399.1	RNA polymerase sigma factor RpoH	-
DK843_RS15905 (DK843_15905)	ftsX	3328254..3329162 (-)	909	WP_114073771.1	permease-like cell division protein FtsX	-
DK843_RS15910 (DK843_15910)	ftsE	3329159..3329812 (-)	654	WP_114061401.1	cell division ATP-binding protein FtsE	-
DK843_RS15915 (DK843_15915)	pilA	3329868..3330773 (-)	906	WP_114073772.1	signal recognition particle-docking protein FtsY	Machinery gene
DK843_RS15920 (DK843_15920)	rsmD	3331245..3331799 (+)	555	WP_114061403.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
DK843_RS15925 (DK843_15925)	-	3331909..3332160 (+)	252	WP_114061404.1	YfhL family 4Fe-4S dicluster ferredoxin	-
DK843_RS15945 (DK843_15945)	tuf	3332651..3333841 (+)	1191	WP_114061405.1	elongation factor Tu	-
DK843_RS15955 (DK843_15955)	secE	3333990..3334346 (+)	357	WP_114061406.1	preprotein translocase subunit SecE	-
DK843_RS15960 (DK843_15960)	nusG	3334346..3334879 (+)	534	WP_011137745.1	transcription termination/antitermination protein NusG	-
DK843_RS15965 (DK843_15965)	rplK	3334980..3335411 (+)	432	WP_021479134.1	50S ribosomal protein L11	-

Sequence

Protein

• Length: 301 a.a.
• Molecular weight: 32217.20 Da
• Isoelectric Point: 6.2846

>NTDB_id=293473 DK843_RS15915 WP_114073772.1 3329868..3330773(-) (pilA) [Chromobacterium phragmitis strain IIBBL 274-1]
MSWTERLKAGLAKTRDKLGKSLAGVFGGGKIDENLYEELETVLLTADMGMDATVHLLQDVRERVSLKGLKDASELKGALK
DSLQDLIGPLEVPLNVEGKKPFVIMMTGVNGAGKTTSIGKLAKYYQSQGKSVLLAAGDTFRAAAREQLIAWGERNSVTVI
AQQGGDSAAVCYDAIQAAVARGIDIVLADTAGRLPTQLHLMEEIKKVKRVIQKALPDAPHEVVLVLDANIGQNTVNQVKA
FDDALGLTGLILTKLDGTAKGGVIAAIAKQRPIPLRFVGVGESIDDLRPFDSRDYIDALFE

Nucleotide

• Length: 906 bp

>NTDB_id=293473 DK843_RS15915 WP_114073772.1 3329868..3330773(-) (pilA) [Chromobacterium phragmitis strain IIBBL 274-1]
ATGAGCTGGACCGAACGGCTGAAGGCGGGTCTGGCCAAAACCCGCGACAAGCTCGGCAAGTCGTTGGCCGGCGTATTCGG
CGGCGGCAAGATAGACGAAAACCTGTATGAAGAGCTGGAAACGGTGCTGCTGACCGCGGACATGGGCATGGATGCGACAG
TGCATCTGCTGCAGGACGTGCGCGAGCGGGTGTCGCTGAAGGGCCTGAAAGACGCGTCGGAACTGAAAGGCGCGCTGAAG
GATTCGCTGCAGGATCTGATCGGCCCGCTGGAAGTGCCGCTGAACGTGGAAGGCAAGAAGCCTTTCGTGATCATGATGAC
CGGCGTCAACGGCGCCGGCAAGACCACCTCCATCGGCAAGCTGGCCAAGTACTACCAAAGCCAGGGCAAGAGCGTGCTGC
TGGCGGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGTTGATCGCCTGGGGCGAGCGCAACAGTGTCACCGTGATC
GCGCAGCAAGGCGGCGACTCAGCCGCCGTGTGCTATGACGCGATCCAGGCCGCCGTCGCCCGCGGCATCGACATCGTGCT
GGCCGACACCGCCGGCCGCCTGCCGACGCAGCTGCACTTGATGGAGGAAATCAAAAAGGTGAAGCGCGTGATCCAGAAGG
CGTTGCCCGATGCGCCGCACGAGGTGGTGCTGGTGCTGGACGCCAATATCGGCCAGAACACCGTCAACCAGGTCAAGGCC
TTCGACGACGCACTGGGTCTCACCGGCTTGATCCTGACCAAACTGGACGGCACCGCCAAGGGCGGCGTCATCGCCGCCAT
CGCCAAGCAGCGGCCGATTCCGCTGCGCTTTGTCGGCGTAGGCGAGAGCATAGACGACCTGCGCCCCTTCGACAGCCGCG
ACTACATCGACGCCCTGTTCGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (101-300)

• SRP54-type protein, helical bundle domain (SRP54_N) (17-83)

3D structure

• AlphaFold DB: A0A344UK65

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	76.821	100	0.771