Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   EQJ08_RS08065 Genome accession   NZ_CP035167
Coordinates   1540005..1540454 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM104008     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535005..1545454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS08025 (EQJ08_08025) ctaE 1535022..1535645 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  EQJ08_RS08030 (EQJ08_08030) ctaF 1535648..1535980 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  EQJ08_RS08035 (EQJ08_08035) ctaG 1536007..1536900 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  EQJ08_RS08040 (EQJ08_08040) ylbA 1536932..1537294 (-) 363 WP_003232238.1 YugN family protein -
  EQJ08_RS08045 (EQJ08_08045) ylbB 1537434..1537880 (+) 447 WP_003221362.1 CBS domain-containing protein -
  EQJ08_RS08050 (EQJ08_08050) ylbC 1537964..1539004 (+) 1041 WP_041850862.1 CAP domain-containing protein -
  EQJ08_RS08055 (EQJ08_08055) ylbD 1539236..1539634 (+) 399 WP_003232233.1 YlbD family protein -
  EQJ08_RS08060 (EQJ08_08060) ylbE 1539650..1539889 (+) 240 WP_003232231.1 YlbE-like family protein -
  EQJ08_RS08065 (EQJ08_08065) ylbF 1540005..1540454 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  EQJ08_RS08070 (EQJ08_08070) ylbG 1540509..1540781 (+) 273 WP_015715839.1 YlbG family protein -
  EQJ08_RS08075 (EQJ08_08075) rsmD 1541104..1541658 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EQJ08_RS08080 (EQJ08_08080) coaD 1541663..1542148 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  EQJ08_RS08085 (EQJ08_08085) spoVV 1542159..1543385 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  EQJ08_RS08090 (EQJ08_08090) ylbK 1543566..1544348 (+) 783 WP_003232221.1 patatin family protein -
  EQJ08_RS08095 (EQJ08_08095) sepM 1544350..1545375 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=293454 EQJ08_RS08065 WP_003221370.1 1540005..1540454(+) (ylbF) [Bacillus subtilis strain SRCM104008]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=293454 EQJ08_RS08065 WP_003221370.1 1540005..1540454(+) (ylbF) [Bacillus subtilis strain SRCM104008]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment