Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   EQJ08_RS03665 Genome accession   NZ_CP035167
Coordinates   717261..718391 (+) Length   376 a.a.
NCBI ID   WP_128441419.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM104008     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 712261..723391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS03650 (EQJ08_03650) atxF 713399..713854 (-) 456 WP_072173434.1 TIGR01741 family protein -
  EQJ08_RS03655 (EQJ08_03655) yeeF 713874..715883 (-) 2010 WP_041851218.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  EQJ08_RS03660 (EQJ08_03660) - 716096..717118 (+) 1023 WP_072173411.1 hypothetical protein -
  EQJ08_RS03665 (EQJ08_03665) rapC 717261..718391 (+) 1131 WP_128441419.1 response regulator aspartate phosphatase RapH Regulator
  EQJ08_RS03670 (EQJ08_03670) phrH 718381..718554 (+) 174 WP_069837348.1 phosphatase RapH inhibitor PhrH -
  EQJ08_RS03675 (EQJ08_03675) yeeI 718714..719433 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQJ08_RS03680 (EQJ08_03680) - 719567..719995 (+) 429 WP_128441421.1 spore coat protein -
  EQJ08_RS03685 (EQJ08_03685) yezE 720110..720694 (+) 585 WP_128441423.1 TetR/AcrR family transcriptional regulator -
  EQJ08_RS03690 (EQJ08_03690) yesE 720774..721217 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  EQJ08_RS03695 (EQJ08_03695) yesF 721214..722079 (+) 866 Protein_676 NAD-dependent epimerase/dehydratase family protein -
  EQJ08_RS03700 (EQJ08_03700) cotJA 722209..722457 (+) 249 WP_088467559.1 spore coat-associated protein CotJA -
  EQJ08_RS03705 (EQJ08_03705) cotJB 722441..722704 (+) 264 WP_003219491.1 spore coat protein CotJB -
  EQJ08_RS03710 (EQJ08_03710) cotJC 722719..723288 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43917.14 Da        Isoelectric Point: 5.7144

>NTDB_id=293420 EQJ08_RS03665 WP_128441419.1 717261..718391(+) (rapC) [Bacillus subtilis strain SRCM104008]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDDIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALDLAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACSRSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=293420 EQJ08_RS03665 WP_128441419.1 717261..718391(+) (rapC) [Bacillus subtilis strain SRCM104008]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGATATTGAGAAAGCCGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTAGATTTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTCCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTTCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.426

100

0.404
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396