Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   EQJ08_RS02425 Genome accession   NZ_CP035167
Coordinates   478741..479175 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain SRCM104008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473741..484175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQJ08_RS02395 (EQJ08_02395) ydaD 474391..475251 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  EQJ08_RS02400 (EQJ08_02400) lyxE 475267..475770 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  EQJ08_RS02405 (EQJ08_02405) ydaF 475856..476407 (+) 552 WP_003234398.1 GNAT family protein -
  EQJ08_RS02410 (EQJ08_02410) ydaG 476485..476907 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  EQJ08_RS02415 (EQJ08_02415) amj 477413..478222 (+) 810 WP_003234394.1 lipid II flippase Amj -
  EQJ08_RS02420 (EQJ08_02420) ydzA 478267..478557 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  EQJ08_RS02425 (EQJ08_02425) lrpC 478741..479175 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  EQJ08_RS02430 (EQJ08_02430) topB 479240..481423 (+) 2184 WP_072173994.1 DNA topoisomerase III -
  EQJ08_RS02435 (EQJ08_02435) ephJ 481626..482714 (+) 1089 WP_046664274.1 lipoprotein YdaJ -
  EQJ08_RS02440 (EQJ08_02440) epsK 482695..483546 (+) 852 WP_046664273.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=293416 EQJ08_RS02425 WP_003246585.1 478741..479175(+) (lrpC) [Bacillus subtilis strain SRCM104008]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=293416 EQJ08_RS02425 WP_003246585.1 478741..479175(+) (lrpC) [Bacillus subtilis strain SRCM104008]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
TAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1