Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DLD54_RS07455 Genome accession   NZ_CP029544
Coordinates   1552258..1554063 (+) Length   601 a.a.
NCBI ID   WP_109918779.1    Uniprot ID   -
Organism   Lactobacillus helsingborgensis strain ESL0183     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547258..1559063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD54_RS07430 (DLD54_07430) - 1547616..1548092 (-) 477 WP_046327608.1 threonine/serine exporter family protein -
  DLD54_RS07435 (DLD54_07435) - 1548095..1548874 (-) 780 WP_046327609.1 threonine/serine exporter family protein -
  DLD54_RS07440 (DLD54_07440) - 1548884..1550431 (-) 1548 WP_109918777.1 ABC-F family ATP-binding cassette domain-containing protein -
  DLD54_RS07445 (DLD54_07445) - 1550538..1550897 (-) 360 WP_038524162.1 hypothetical protein -
  DLD54_RS07450 (DLD54_07450) - 1550927..1552108 (-) 1182 WP_109918778.1 LCP family protein -
  DLD54_RS07455 (DLD54_07455) pepF 1552258..1554063 (+) 1806 WP_109918779.1 oligoendopeptidase F Regulator
  DLD54_RS07460 (DLD54_07460) - 1554172..1555314 (-) 1143 WP_109918780.1 ArgE/DapE family deacylase -
  DLD54_RS07465 (DLD54_07465) - 1555328..1556077 (-) 750 WP_038524174.1 amino acid ABC transporter ATP-binding protein -
  DLD54_RS07470 (DLD54_07470) - 1556070..1557560 (-) 1491 WP_109918781.1 ABC transporter substrate-binding protein/permease -
  DLD54_RS07475 (DLD54_07475) - 1557721..1558950 (-) 1230 WP_046327617.1 lactate oxidase -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68436.61 Da        Isoelectric Point: 4.8568

>NTDB_id=293394 DLD54_RS07455 WP_109918779.1 1552258..1554063(+) (pepF) [Lactobacillus helsingborgensis strain ESL0183]
MTIPKRKDVPENLKWDLTRIFKSDEDWEDEYTRVKKEIPALSTIKDNFTTSGTSLYDGITQIFAVTRHLEKVYTYASLSS
DVDTKDAHYLGLVSQVQGLGNQFDAATAFMAPAILSLSPEKLTAFKREEPRLADYNHLLDQITRMRPYTLSAQEEKLVAD
AGDAMSASENTYNVLTNSDMEFGYTQNDDGEMVQLSEGLYSLLIQSQNRTIRKEAFDAMYATYGQYQNSLAATLSGVVKK
HNYYARVHHYKSARDCAINENNVPAAVYDTLIAEVNKHIDLLHEYVALRKQILGLKDLQMWDIYVPLTGKPSLSYTFDSA
KAEAQKALQPLGADYLKQVDYIFNNRVIDVVESKNKVTGAYSGGCYDTDAYELLNWEDNIDSLYTLVHETGHSVHSMYTR
QNQPYVYGNYPIFVAEIASTTNENILTEYFLAHVKDPKTRAFVLNYYLDSFKGTLFRQAQFAEFEQKIHEMDAQGEPLTA
DRLNKCYGELNQRYYGDCVEPGGEIAKEWTRIPHFYYNFYVYQYATGFAAATALANNVVHGTEEQTTAYINFLKSGSSDY
PVEIMKKAGVDMTQPEYLEEAFATFAKRLAEFKEIVQNNFS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=293394 DLD54_RS07455 WP_109918779.1 1552258..1554063(+) (pepF) [Lactobacillus helsingborgensis strain ESL0183]
ATGACAATTCCTAAAAGAAAAGACGTCCCTGAGAATCTTAAATGGGACTTAACCAGAATATTCAAATCTGATGAAGACTG
GGAAGATGAATATACACGTGTTAAAAAAGAAATACCAGCTTTAAGCACTATCAAAGATAATTTTACTACTTCGGGAACCT
CTTTATATGACGGGATTACGCAAATATTTGCAGTTACTCGCCACTTGGAAAAAGTTTATACTTATGCCAGTTTGTCCAGT
GATGTCGATACCAAAGATGCCCACTATTTAGGTTTAGTTTCTCAAGTACAAGGACTAGGTAATCAATTTGATGCCGCTAC
CGCTTTTATGGCTCCCGCAATTTTAAGTCTTTCTCCTGAAAAATTAACCGCCTTTAAACGCGAAGAACCAAGACTAGCTG
ATTACAATCATTTATTGGATCAGATTACCAGAATGCGGCCATATACTTTATCTGCTCAAGAAGAAAAATTAGTTGCCGAT
GCTGGAGATGCAATGTCTGCTTCTGAAAACACCTATAATGTGCTGACTAATTCGGATATGGAATTTGGTTATACGCAAAA
TGATGACGGCGAAATGGTGCAATTATCGGAAGGATTATATTCCTTACTAATCCAATCGCAAAACAGAACTATCCGCAAGG
AAGCTTTTGACGCCATGTATGCCACATACGGTCAATACCAAAACTCATTGGCGGCCACTCTTTCTGGAGTAGTCAAAAAG
CATAACTATTATGCGCGCGTTCATCATTATAAATCAGCCCGCGATTGCGCGATTAACGAAAACAATGTACCGGCAGCTGT
TTACGATACCTTAATTGCAGAGGTAAACAAGCATATAGACTTACTACATGAATATGTGGCTCTGCGTAAACAAATTTTAG
GTTTAAAAGACCTGCAAATGTGGGACATCTATGTGCCCCTGACAGGCAAACCATCTTTAAGCTATACATTTGACTCAGCC
AAAGCGGAAGCGCAAAAAGCGTTGCAACCACTTGGAGCAGATTATTTAAAACAGGTAGACTATATTTTCAATAATCGGGT
AATTGATGTCGTTGAATCAAAAAATAAAGTTACAGGGGCTTATTCTGGTGGCTGCTATGATACGGACGCTTACGAACTCC
TTAACTGGGAGGATAATATTGATTCTCTGTATACTTTAGTACACGAAACGGGACATTCAGTTCACAGTATGTATACGAGA
CAAAATCAGCCTTACGTTTATGGTAATTATCCTATATTTGTTGCCGAAATTGCCTCAACTACTAACGAAAACATCCTGAC
CGAATACTTTTTAGCCCATGTAAAAGATCCTAAAACACGTGCATTCGTTCTTAATTACTACTTAGATTCATTTAAAGGGA
CTTTATTCAGACAAGCTCAATTCGCCGAATTTGAACAAAAAATACACGAAATGGATGCTCAGGGTGAACCTTTAACTGCT
GACCGGCTAAATAAATGCTATGGTGAACTTAACCAGCGCTACTATGGCGATTGCGTTGAACCGGGCGGAGAAATTGCCAA
AGAGTGGACCAGAATCCCGCACTTTTACTACAATTTCTATGTCTACCAGTATGCTACAGGTTTTGCTGCAGCTACAGCTT
TGGCTAATAACGTTGTTCATGGCACCGAAGAACAAACGACAGCTTACATTAACTTTTTAAAATCTGGTTCAAGTGACTAT
CCGGTTGAAATCATGAAAAAAGCAGGCGTTGACATGACTCAACCTGAATATTTGGAAGAAGCATTTGCCACTTTTGCCAA
GCGCTTAGCTGAATTTAAGGAAATTGTTCAAAATAATTTCAGTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.324

98.502

0.486

Multiple sequence alignment