Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EQI87_RS20780 Genome accession   NZ_CP035166
Coordinates   3969567..3970256 (-) Length   229 a.a.
NCBI ID   WP_046381459.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103971     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3964567..3975256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS20760 (EQI87_20760) yxeA 3965472..3965819 (-) 348 WP_015715011.1 YxeA family protein -
  EQI87_RS20765 (EQI87_20765) yxdM 3965833..3967701 (-) 1869 WP_046381458.1 ABC transporter permease YxdM -
  EQI87_RS20770 (EQI87_20770) yxdL 3967676..3968449 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  EQI87_RS20775 (EQI87_20775) yxdK 3968593..3969570 (-) 978 WP_024572300.1 two-component system sensor histidine kinase YxdK -
  EQI87_RS20780 (EQI87_20780) braR 3969567..3970256 (-) 690 WP_046381459.1 two-component system response regulator YxdJ Regulator
  EQI87_RS20785 (EQI87_20785) iolJ 3970364..3971236 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  EQI87_RS20790 (EQI87_20790) iolI 3971257..3972093 (-) 837 WP_046381460.1 2-keto-myo-inositol isomerase -
  EQI87_RS20795 (EQI87_20795) iolH 3972179..3973048 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  EQI87_RS20800 (EQI87_20800) iolG 3973068..3974102 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26627.41 Da        Isoelectric Point: 4.9648

>NTDB_id=293387 EQI87_RS20780 WP_046381459.1 3969567..3970256(-) (braR) [Bacillus subtilis strain SRCM103971]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFKAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=293387 EQI87_RS20780 WP_046381459.1 3969567..3970256(-) (braR) [Bacillus subtilis strain SRCM103971]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTAAAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406