Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DK842_RS21870 Genome accession   NZ_CP029495
Coordinates   4619179..4620540 (-) Length   453 a.a.
NCBI ID   WP_114063386.1    Uniprot ID   A0A344UEH0
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4614179..4625540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS21845 (DK842_21845) - 4615572..4616546 (+) 975 WP_114063381.1 hypothetical protein -
  DK842_RS21850 (DK842_21850) - 4616553..4617347 (-) 795 WP_114063382.1 transporter substrate-binding domain-containing protein -
  DK842_RS21855 (DK842_21855) - 4617607..4617960 (+) 354 WP_114063383.1 DUF2325 domain-containing protein -
  DK842_RS23210 - 4617992..4618414 (-) 423 WP_145964118.1 hypothetical protein -
  DK842_RS21860 (DK842_21860) - 4618420..4618617 (-) 198 WP_114063384.1 zf-HC2 domain-containing protein -
  DK842_RS21865 (DK842_21865) - 4618614..4619174 (-) 561 WP_114063385.1 sigma-70 family RNA polymerase sigma factor -
  DK842_RS21870 (DK842_21870) radA 4619179..4620540 (-) 1362 WP_114063386.1 DNA repair protein RadA Machinery gene
  DK842_RS21875 (DK842_21875) - 4620614..4621147 (-) 534 WP_114063387.1 hypothetical protein -
  DK842_RS21880 (DK842_21880) - 4621162..4621923 (-) 762 WP_114063388.1 SDR family oxidoreductase -
  DK842_RS21885 (DK842_21885) hpnE 4621920..4623191 (-) 1272 WP_168194956.1 hydroxysqualene dehydroxylase HpnE -
  DK842_RS21890 (DK842_21890) hpnD 4623188..4624033 (-) 846 WP_114063390.1 presqualene diphosphate synthase HpnD -
  DK842_RS21895 (DK842_21895) hpnC 4624098..4624910 (-) 813 WP_114063391.1 squalene synthase HpnC -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48724.00 Da        Isoelectric Point: 6.8122

>NTDB_id=293307 DK842_RS21870 WP_114063386.1 4619179..4620540(-) (radA) [Chromobacterium phragmitis strain IIBBL 112-1]
MAKNKTVFSCTECGGQSPKWQGQCPHCNAWNTLVEAVAAPAAAGPRFQSWAANVTKVQKLSEVQTEETPRDPSGIDELDR
VLGGGIVRGAVVLIGGDPGIGKSTLLLQALSQIGQNRKVLYVSGEESAQQIALRASRLALDTSNVDLLAEICIENILATL
KREQPDVVVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQSGITVLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSSYRMIRAIKNRFGAVNELGVFAMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGTRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNKALPEKLVVFGEVGLAGEV
RPVTRGQERLKEAAKLGFTRAIVPSANKPRQEIEGLKVLAVDRLDQAVEYCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=293307 DK842_RS21870 WP_114063386.1 4619179..4620540(-) (radA) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGGCCAAGAACAAAACCGTATTCAGCTGCACCGAGTGCGGCGGACAGTCGCCCAAATGGCAGGGCCAATGCCCGCATTG
CAACGCCTGGAACACGCTGGTGGAGGCGGTGGCCGCGCCGGCGGCGGCCGGCCCGCGCTTCCAGTCCTGGGCGGCTAACG
TCACCAAGGTGCAGAAGCTGTCCGAGGTGCAGACCGAGGAAACCCCGCGCGATCCGTCCGGCATCGACGAGCTGGACCGC
GTGCTGGGCGGCGGCATCGTCCGCGGCGCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGTAAGTCCACGCTGCTGTT
GCAGGCGCTGTCGCAGATCGGGCAAAACCGCAAGGTATTGTATGTGTCCGGCGAGGAATCGGCGCAGCAGATCGCGCTGC
GCGCCTCGAGGCTGGCGCTGGATACCAGCAACGTCGACCTGCTGGCCGAGATCTGCATCGAGAACATCCTGGCCACGCTG
AAACGCGAGCAGCCGGACGTGGTGGTGATCGACTCGATCCAGACCCTGTACACCGAGCAGGTGACTTCGGCGCCGGGCTC
GGTGTCGCAGGTGCGCGAGTGCGCGGCGCAACTGACGCGGATGGCCAAGCAGAGCGGCATCACCGTGCTGCTGGTCGGCC
ACGTCACCAAGGAAGGCTCGCTGGCCGGCCCGCGCGTGCTGGAGCACATGGTGGACACCGTGCTGTATTTCGAGGGCGAC
TCCCATTCCAGCTACCGGATGATACGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGAC
CGATCGCGGCCTGAAGGGCGTGTCCAATCCATCTGCCATTTTCCTGTCTTCCTATCGAGACGACGTCGCCGGCTCCTGCG
TGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGATGACTGCCACGGCTTCCAGCCC
AAGCGCCTTACCGTCGGCCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCATCGCCACGGCGGCGTGGCCTG
CTTCGACCAGGACGTGTTCCTCAACGCGGTGGGCGGCGTCAAGATCAACGAACCGGCGGCCGACCTGGCCATCATCCTGG
CCATGGTTTCGTCCTTGCGCAACAAGGCGCTGCCGGAGAAACTGGTGGTGTTCGGCGAGGTGGGCCTGGCTGGCGAGGTG
CGGCCGGTGACGCGCGGGCAGGAACGGTTGAAGGAAGCCGCCAAACTCGGCTTCACCCGCGCCATCGTGCCTTCCGCCAA
CAAGCCGCGGCAGGAAATAGAAGGCCTGAAGGTATTGGCCGTGGACCGCCTGGACCAGGCGGTGGAATATTGCAGGGAGT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-446)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344UEH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

100

0.503
  radA Streptococcus mitis SK321

48.451

99.779

0.483
  radA Streptococcus mitis NCTC 12261

48.23

99.779

0.481
  radA Streptococcus pneumoniae TIGR4

50.472

93.598

0.472
  radA Streptococcus pneumoniae D39

50.472

93.598

0.472
  radA Streptococcus pneumoniae Rx1

50.472

93.598

0.472
  radA Streptococcus pneumoniae R6

50.472

93.598

0.472

Multiple sequence alignment