Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   EQI87_RS08530 Genome accession   NZ_CP035166
Coordinates   1584206..1584655 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM103971     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579206..1589655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQI87_RS08490 (EQI87_08490) ctaE 1579222..1579845 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  EQI87_RS08495 (EQI87_08495) ctaF 1579848..1580180 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  EQI87_RS08500 (EQI87_08500) ctaG 1580208..1581101 (+) 894 WP_046380999.1 cytochrome c oxidase assembly factor CtaG -
  EQI87_RS08505 (EQI87_08505) ylbA 1581133..1581495 (-) 363 WP_003232238.1 YugN family protein -
  EQI87_RS08510 (EQI87_08510) ylbB 1581635..1582081 (+) 447 WP_003221362.1 CBS domain-containing protein -
  EQI87_RS08515 (EQI87_08515) ylbC 1582165..1583205 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  EQI87_RS08520 (EQI87_08520) ylbD 1583437..1583835 (+) 399 WP_003232233.1 YlbD family protein -
  EQI87_RS08525 (EQI87_08525) ylbE 1583851..1584090 (+) 240 WP_046381000.1 YlbE-like family protein -
  EQI87_RS08530 (EQI87_08530) ylbF 1584206..1584655 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  EQI87_RS08535 (EQI87_08535) ylbG 1584710..1584982 (+) 273 WP_015715839.1 YlbG family protein -
  EQI87_RS08540 (EQI87_08540) rsmD 1585305..1585859 (+) 555 WP_029317761.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  EQI87_RS08545 (EQI87_08545) coaD 1585864..1586349 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  EQI87_RS08550 (EQI87_08550) spoVV 1586360..1587586 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  EQI87_RS08555 (EQI87_08555) ylbK 1587767..1588549 (+) 783 WP_003232221.1 patatin family protein -
  EQI87_RS08560 (EQI87_08560) sepM 1588551..1589576 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=293307 EQI87_RS08530 WP_003221370.1 1584206..1584655(+) (ylbF) [Bacillus subtilis strain SRCM103971]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=293307 EQI87_RS08530 WP_003221370.1 1584206..1584655(+) (ylbF) [Bacillus subtilis strain SRCM103971]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGGCGGATTATTCGTTCTTTTATTAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment